I have made an application already that sends commands to an activated window. I want to be able to use the computer while my process is running because as soon as I switch focus to another window the key strokes being sent via send keys will go to the window I just switched to.
Currently I use FindWindow, IsIconic, and ShowWindow from the Windows API. I have to check to see if the window is there with FindWindow and set my object to the specific window that is returned with that call, I then check if it's minimized with IsIconic and call ShowWindow if it is, and then finally I have to call Interaction.AppActivate to set focus to that window. All of this is done before I even send key strokes. Seems like there should be a way to just send key strokes without having to show the window and activate it. The big thing is while my application is running the key strokes I can't do anything on my computer.
Alright, this is kind of disappointing I'm sure, but you fundamentally cannot do this with 100% reliability.
Windows assumes that the active window is the one getting keyboard input. The proper way to fake keyboard input is with SendInput, and you'll notice that it sends messages to the active window only.
That being said, you can SendMessage WM_KEYUP, WM_CHAR, and WM_KEYDOWN messages and (depending on the WndProc receiving them) maybe get away with it. But remember, its going to break under some circumstances, period.