What is the most effective (ie efficient / appropriate) way to clean up a factor containing multiple levels that need to be collapsed? That is, how to combine two or more factor levels into one.
Here's an example where the two levels "Yes" and "Y" should be collapsed to "Yes", and "No" and "N" collapsed to "No":
## Given:
x <- c("Y", "Y", "Yes", "N", "No", "H") # The 'H' should be treated as NA
## expectedOutput
[1] Yes Yes Yes No No <NA>
Levels: Yes No # <~~ NOTICE ONLY **TWO** LEVELS
One option is of course to clean the strings before hand using sub and friends.
Another method, is to allow duplicate label, then drop them
## Duplicate levels ==> "Warning: deprecated"
x.f <- factor(x, levels=c("Y", "Yes", "No", "N"), labels=c("Yes", "Yes", "No", "No"))
## the above line can be wrapped in either of the next two lines
factor(x.f)
droplevels(x.f)
However, is there a more effective way?
While I know that the levels and labels arguments should be vectors, I experimented with lists and named lists and named vectors to see what happens
Needless to say, none of the following got me any closer to my goal.
factor(x, levels=list(c("Yes", "Y"), c("No", "N")), labels=c("Yes", "No"))
factor(x, levels=c("Yes", "No"), labels=list(c("Yes", "Y"), c("No", "N")))
factor(x, levels=c("Y", "Yes", "No", "N"), labels=c(Y="Yes", Yes="Yes", No="No", N="No"))
factor(x, levels=c("Y", "Yes", "No", "N"), labels=c(Yes="Y", Yes="Yes", No="No", No="N"))
factor(x, levels=c("Yes", "No"), labels=c(Y="Yes", Yes="Yes", No="No", N="No"))
UPDATE 2: See Uwe's answer which shows the new "tidyverse" way of doing this, which is quickly becoming the standard.
UPDATE 1: Duplicated labels (but not levels!) are now indeed allowed (per my comment above); see Tim's answer.
ORIGINAL ANSWER, BUT STILL USEFUL AND OF INTEREST:
There is a little known option to pass a named list to the levels function, for exactly this purpose. The names of the list should be the desired names of the levels and the elements should be the current names that should be renamed. Some (including the OP, see Ricardo's comment to Tim's answer) prefer this for ease of reading.
x <- c("Y", "Y", "Yes", "N", "No", "H", NA)
x <- factor(x)
levels(x) <- list("Yes"=c("Y", "Yes"), "No"=c("N", "No"))
x
## [1] Yes Yes Yes No No <NA> <NA>
## Levels: Yes No
As mentioned in the levels documentation; also see the examples there.
value: For the 'factor' method, a vector of character strings with length at least the number of levels of 'x', or a named list specifying how to rename the levels.
This can also be done in one line, as Marek does here; the levels<- sorcery is explained here.
> `levels<-`(factor(x), list(Yes=c("Y", "Yes"), No=c("N", "No")))
[1] Yes Yes Yes No No <NA>
Levels: Yes No