Mongo exit code 45, can't start mongod, MongoDB cannot open or obtain a lock on a file

My Meteor application keeps crashing with this message when I type mrt (mrt should start the Meteor application):

Unexpected mongo exit code 45. Restarting.

Unexpected mongo exit code 45. Restarting.

Unexpected mongo exit code 45. Restarting.

Can't start mongod

MongoDB cannot open or obtain a lock on a file

Doing it with sudo mrt, it works.

I got to this error after fixing other erros. I fixed the errors I got before by typing:

sudo chmod -R 777 ./

Before, I had other errors. But now I do not know what it could be as there shouldn't be differences between root and my user in that directory.

For Non-Meteor users: Meteor has a little mongodb in its .meteor directory.

What could be the reason?

This is the requested output from ls -Rl .meteor/ | grep root executed as a normal user :

drwxrwxrwx 4 root root 4096 Jan  3 19:59 local
-rwxrwxrwx 1 root root  220 Jan  3 11:51 packages
-rwxrwxrwx 1 root root    8 Dec 29 12:35 release
drwxrwxrwx 4 root    root 4096 Jan  3 19:59 build
drwxrwxrwx 2 vagrant root 4096 Dec 29 12:39 db
-rwxrwxrwx 1 root root  151 Jan  3 19:59 main.js
drwxrwxrwx 5 root root 4096 Jan  3 19:59 programs
-rwxrwxrwx 1 root root  650 Jan  3 19:59 README
drwxrwxrwx 2 root root 4096 Jan  3 19:59 server
-rwxrwxrwx 1 root root  459 Jan  3 19:59 star.json
drwxrwxrwx 4 root root 4096 Jan  3 19:59 client
drwxrwxrwx 4 root root 4096 Jan  3 19:59 ctl
drwxrwxrwx 5 root root 4096 Jan  3 19:59 server
drwxrwxrwx 3 root root  4096 Jan  3 19:59 app
-rwxrwxrwx 1 root root  5836 Jan  3 19:59 app.html
drwxrwxrwx 2 root root  4096 Jan  3 19:59 packages
-rwxrwxrwx 1 root root 16184 Jan  3 19:59 program.json
drwxrwxrwx 3 root root 4096 Jan  3 19:59 app
drwxrwxrwx 3 root root 4096 Jan  3 19:59 lib
-rwxrwxrwx 1 root root 1429 Jan  3 19:59 main.css
-rwxrwxrwx 1 root root 4153 Jan  3 19:59 main.js
-rwxrwxrwx 1 root root  395 Jan  3 19:59 template.main.js
-rwxrwxrwx 1 root root  337 Jan  3 19:59 template.templates.js
drwxrwxrwx 3 root root 4096 Jan  3 19:59 highlight.js
-rwxrwxrwx 1 root root 17848 Jan  3 19:59 highlight.pack.js
drwxrwxrwx 2 root root  4096 Jan  3 19:59 styles
-rwxrwxrwx 1 root root 2552 Jan  3 19:59 default.css
-rwxrwxrwx 1 root root    1557 Jan  3 19:59 application-configuration.js
-rwxrwxrwx 1 root root     131 Jan  3 19:59 application-configuration.js.map
-rwxrwxrwx 1 root root   10296 Jan  3 19:59 autoupdate.js
-rwxrwxrwx 1 root root    4344 Jan  3 19:59 autoupdate.js.map
-rwxrwxrwx 1 root root   30962 Jan  3 19:59 check.js
-rwxrwxrwx 1 root root   13769 Jan  3 19:59 check.js.map
-rwxrwxrwx 1 root root   34115 Jan  3 19:59 deps.js
-rwxrwxrwx 1 root root   12796 Jan  3 19:59 deps.js.map
-rwxrwxrwx 1 root root   59298 Jan  3 19:59 domutils.js
-rwxrwxrwx 1 root root   25408 Jan  3 19:59 domutils.js.map
-rwxrwxrwx 1 root root   67567 Jan  3 19:59 ejson.js
-rwxrwxrwx 1 root root   21692 Jan  3 19:59 ejson.js.map
-rwxrwxrwx 1 root root    1562 Jan  3 19:59 follower-livedata.js
-rwxrwxrwx 1 root root     125 Jan  3 19:59 follower-livedata.js.map
-rwxrwxrwx 1 root root   48406 Jan  3 19:59 geojson-utils.js
-rwxrwxrwx 1 root root   15990 Jan  3 19:59 geojson-utils.js.map
-rwxrwxrwx 1 root root     493 Jan  3 19:59 global-imports.js
-rwxrwxrwx 1 root root   37547 Jan  3 19:59 handlebars.js
-rwxrwxrwx 1 root root   16703 Jan  3 19:59 handlebars.js.map
-rwxrwxrwx 1 root root 1202072 Jan  3 19:59 jquery.js
-rwxrwxrwx 1 root root  366987 Jan  3 19:59 jquery.js.map
-rwxrwxrwx 1 root root   58410 Jan  3 19:59 json.js
-rwxrwxrwx 1 root root   21539 Jan  3 19:59 json.js.map
-rwxrwxrwx 1 root root  560614 Jan  3 19:59 livedata.js
-rwxrwxrwx 1 root root  189125 Jan  3 19:59 livedata.js.map
-rwxrwxrwx 1 root root   62132 Jan  3 19:59 liverange.js
-rwxrwxrwx 1 root root   29655 Jan  3 19:59 liverange.js.map
-rwxrwxrwx 1 root root   27875 Jan  3 19:59 logging.js
-rwxrwxrwx 1 root root   10321 Jan  3 19:59 logging.js.map
-rwxrwxrwx 1 root root  102074 Jan  3 19:59 marked.js
-rwxrwxrwx 1 root root   33820 Jan  3 19:59 marked.js.map
-rwxrwxrwx 1 root root   82210 Jan  3 19:59 meteor.js
-rwxrwxrwx 1 root root   26826 Jan  3 19:59 meteor.js.map
-rwxrwxrwx 1 root root  323368 Jan  3 19:59 minimongo.js
-rwxrwxrwx 1 root root  121486 Jan  3 19:59 minimongo.js.map
-rwxrwxrwx 1 root root  102219 Jan  3 19:59 mongo-livedata.js
-rwxrwxrwx 1 root root   39683 Jan  3 19:59 mongo-livedata.js.map
-rwxrwxrwx 1 root root   20462 Jan  3 19:59 ordered-dict.js
-rwxrwxrwx 1 root root    7503 Jan  3 19:59 ordered-dict.js.map
-rwxrwxrwx 1 root root   53364 Jan  3 19:59 page-js-ie-support.js
-rwxrwxrwx 1 root root   13636 Jan  3 19:59 page-js-ie-support.js.map
-rwxrwxrwx 1 root root    2558 Jan  3 19:59 preserve-inputs.js
-rwxrwxrwx 1 root root     471 Jan  3 19:59 preserve-inputs.js.map
-rwxrwxrwx 1 root root   21800 Jan  3 19:59 random.js
-rwxrwxrwx 1 root root    8299 Jan  3 19:59 random.js.map
-rwxrwxrwx 1 root root   13878 Jan  3 19:59 reactive-dict.js
-rwxrwxrwx 1 root root    5176 Jan  3 19:59 reactive-dict.js.map
-rwxrwxrwx 1 root root   19595 Jan  3 19:59 reload.js
-rwxrwxrwx 1 root root    7551 Jan  3 19:59 reload.js.map
-rwxrwxrwx 1 root root   44685 Jan  3 19:59 router.js
-rwxrwxrwx 1 root root   13728 Jan  3 19:59 router.js.map
-rwxrwxrwx 1 root root    3314 Jan  3 19:59 session.js
-rwxrwxrwx 1 root root     661 Jan  3 19:59 session.js.map
-rwxrwxrwx 1 root root  204184 Jan  3 19:59 spark.js
-rwxrwxrwx 1 root root   83409 Jan  3 19:59 spark.js.map
-rwxrwxrwx 1 root root    1466 Jan  3 19:59 spiderable.js
-rwxrwxrwx 1 root root     114 Jan  3 19:59 spiderable.js.map
-rwxrwxrwx 1 root root    1457 Jan  3 19:59 standard-app-packages.js
-rwxrwxrwx 1 root root     124 Jan  3 19:59 standard-app-packages.js.map
-rwxrwxrwx 1 root root    1356 Jan  3 19:59 startup.js
-rwxrwxrwx 1 root root     108 Jan  3 19:59 startup.js.map
-rwxrwxrwx 1 root root   24071 Jan  3 19:59 templating.js
-rwxrwxrwx 1 root root    9422 Jan  3 19:59 templating.js.map
-rwxrwxrwx 1 root root  147815 Jan  3 19:59 underscore.js
-rwxrwxrwx 1 root root   54556 Jan  3 19:59 underscore.js.map
-rwxrwxrwx 1 root root   59722 Jan  3 19:59 universal-events.js
-rwxrwxrwx 1 root root   28310 Jan  3 19:59 universal-events.js.map
-rwxrwxrwx 1 root root    1355 Jan  3 19:59 webapp.js
-rwxrwxrwx 1 root root     107 Jan  3 19:59 webapp.js.map
-rwxrwxrwx 1 root root 6411 Jan  3 19:59 boot.js
-rwxrwxrwx 1 root root   32 Jan  3 19:59 config.json
lrwxrwxrwx 1 root root   47 Jan  3 19:59 node_modules -> /root/.meteor/tools/09b63f1ed5/lib/node_modules
drwxrwxrwx 6 root root 4096 Jan  3 19:59 npm
drwxrwxrwx 2 root root 4096 Jan  3 19:59 packages
-rwxrwxrwx 1 root root 2603 Jan  3 19:59 program.json
-rwxrwxrwx 1 root root 2716 Jan  3 19:59 start.sh
drwxrwxrwx 3 root root 4096 Jan  3 19:59 ctl-helper
drwxrwxrwx 3 root root 4096 Jan  3 19:59 livedata
drwxrwxrwx 3 root root 4096 Jan  3 19:59 logging
drwxrwxrwx 3 root root 4096 Jan  3 19:59 mongo-livedata
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 61 Jan  3 19:59 node_modules -> /root/.meteor/packages/ctl-helper/d6214568fb/npm/node_modules
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 59 Jan  3 19:59 node_modules -> /root/.meteor/packages/livedata/f69d9149dd/npm/node_modules
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 58 Jan  3 19:59 node_modules -> /root/.meteor/packages/logging/04f04cd832/npm/node_modules
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 65 Jan  3 19:59 node_modules -> /root/.meteor/packages/mongo-livedata/133ed3e7a3/npm/node_modules
-rwxrwxrwx 1 root root  14673 Jan  3 19:59 application-configuration.js
-rwxrwxrwx 1 root root   5102 Jan  3 19:59 application-configuration.js.map
-rwxrwxrwx 1 root root  29768 Jan  3 19:59 check.js
-rwxrwxrwx 1 root root  13747 Jan  3 19:59 check.js.map
-rwxrwxrwx 1 root root  21450 Jan  3 19:59 ctl-helper.js
-rwxrwxrwx 1 root root   8410 Jan  3 19:59 ctl-helper.js.map
-rwxrwxrwx 1 root root  14131 Jan  3 19:59 ctl.js
-rwxrwxrwx 1 root root   5110 Jan  3 19:59 ctl.js.map
-rwxrwxrwx 1 root root  32921 Jan  3 19:59 deps.js
-rwxrwxrwx 1 root root  12774 Jan  3 19:59 deps.js.map
-rwxrwxrwx 1 root root  66343 Jan  3 19:59 ejson.js
-rwxrwxrwx 1 root root  21669 Jan  3 19:59 ejson.js.map
-rwxrwxrwx 1 root root  26264 Jan  3 19:59 follower-livedata.js
-rwxrwxrwx 1 root root   9274 Jan  3 19:59 follower-livedata.js.map
-rwxrwxrwx 1 root root  47212 Jan  3 19:59 geojson-utils.js
-rwxrwxrwx 1 root root  15968 Jan  3 19:59 geojson-utils.js.map
-rwxrwxrwx 1 root root    159 Jan  3 19:59 json.js
-rwxrwxrwx 1 root root     83 Jan  3 19:59 json.js.map
-rwxrwxrwx 1 root root 486950 Jan  3 19:59 livedata.js
-rwxrwxrwx 1 root root 159409 Jan  3 19:59 livedata.js.map
-rwxrwxrwx 1 root root  26681 Jan  3 19:59 logging.js
-rwxrwxrwx 1 root root  10299 Jan  3 19:59 logging.js.map
-rwxrwxrwx 1 root root 117915 Jan  3 19:59 meteor.js
-rwxrwxrwx 1 root root  38384 Jan  3 19:59 meteor.js.map
-rwxrwxrwx 1 root root 345015 Jan  3 19:59 minimongo.js
-rwxrwxrwx 1 root root 129871 Jan  3 19:59 minimongo.js.map
-rwxrwxrwx 1 root root 366752 Jan  3 19:59 mongo-livedata.js
-rwxrwxrwx 1 root root 143322 Jan  3 19:59 mongo-livedata.js.map
-rwxrwxrwx 1 root root  19268 Jan  3 19:59 ordered-dict.js
-rwxrwxrwx 1 root root   7481 Jan  3 19:59 ordered-dict.js.map
-rwxrwxrwx 1 root root  20606 Jan  3 19:59 random.js
-rwxrwxrwx 1 root root   8277 Jan  3 19:59 random.js.map
-rwxrwxrwx 1 root root 146621 Jan  3 19:59 underscore.js
-rwxrwxrwx 1 root root  54534 Jan  3 19:59 underscore.js.map
drwxrwxrwx 3 root root 4096 Jan  3 19:59 app
-rwxrwxrwx 1 root root 6411 Jan  3 19:59 boot.js
-rwxrwxrwx 1 root root   70 Jan  3 19:59 config.json
lrwxrwxrwx 1 root root   47 Jan  3 19:59 node_modules -> /root/.meteor/tools/09b63f1ed5/lib/node_modules
drwxrwxrwx 8 root root 4096 Jan  3 19:59 npm
drwxrwxrwx 2 root root 4096 Jan  3 19:59 packages
-rwxrwxrwx 1 root root 4508 Jan  3 19:59 program.json
-rwxrwxrwx 1 root root 2716 Jan  3 19:59 start.sh
drwxrwxrwx 3 root root 4096 Jan  3 19:59 app
drwxrwxrwx 3 root root 4096 Jan  3 19:59 lib
-rwxrwxrwx 1 root root 4153 Jan  3 19:59 main.js
drwxrwxrwx 2 root root 4096 Jan  3 19:59 highlight.js
-rwxrwxrwx 1 root root 17848 Jan  3 19:59 highlight.pack.js
drwxrwxrwx 3 root root 4096 Jan  3 19:59 handlebars
drwxrwxrwx 3 root root 4096 Jan  3 19:59 livedata
drwxrwxrwx 3 root root 4096 Jan  3 19:59 logging
drwxrwxrwx 3 root root 4096 Jan  3 19:59 mongo-livedata
drwxrwxrwx 3 root root 4096 Jan  3 19:59 router
drwxrwxrwx 3 root root 4096 Jan  3 19:59 webapp
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 61 Jan  3 19:59 node_modules -> /root/.meteor/packages/handlebars/0a8b732b9d/npm/node_modules
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 59 Jan  3 19:59 node_modules -> /root/.meteor/packages/livedata/f69d9149dd/npm/node_modules
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 58 Jan  3 19:59 node_modules -> /root/.meteor/packages/logging/04f04cd832/npm/node_modules
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 65 Jan  3 19:59 node_modules -> /root/.meteor/packages/mongo-livedata/133ed3e7a3/npm/node_modules
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 51 Jan  3 19:59 node_modules -> /var/www/tk/packages/router/.build/npm/node_modules
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 57 Jan  3 19:59 node_modules -> /root/.meteor/packages/webapp/06c8311d2d/npm/node_modules
-rwxrwxrwx 1 root root  14673 Jan  3 19:59 application-configuration.js
-rwxrwxrwx 1 root root   5102 Jan  3 19:59 application-configuration.js.map
-rwxrwxrwx 1 root root   8244 Jan  3 19:59 autoupdate.js
-rwxrwxrwx 1 root root   4008 Jan  3 19:59 autoupdate.js.map
-rwxrwxrwx 1 root root  29768 Jan  3 19:59 check.js
-rwxrwxrwx 1 root root  13747 Jan  3 19:59 check.js.map
-rwxrwxrwx 1 root root  32921 Jan  3 19:59 deps.js
-rwxrwxrwx 1 root root  12774 Jan  3 19:59 deps.js.map
-rwxrwxrwx 1 root root  66343 Jan  3 19:59 ejson.js
-rwxrwxrwx 1 root root  21669 Jan  3 19:59 ejson.js.map
-rwxrwxrwx 1 root root  26264 Jan  3 19:59 follower-livedata.js
-rwxrwxrwx 1 root root   9274 Jan  3 19:59 follower-livedata.js.map
-rwxrwxrwx 1 root root  47212 Jan  3 19:59 geojson-utils.js
-rwxrwxrwx 1 root root  15968 Jan  3 19:59 geojson-utils.js.map
-rwxrwxrwx 1 root root    588 Jan  3 19:59 global-imports.js
-rwxrwxrwx 1 root root  16964 Jan  3 19:59 handlebars.js
-rwxrwxrwx 1 root root   8220 Jan  3 19:59 handlebars.js.map
-rwxrwxrwx 1 root root    161 Jan  3 19:59 jquery.js
-rwxrwxrwx 1 root root     85 Jan  3 19:59 jquery.js.map
-rwxrwxrwx 1 root root    159 Jan  3 19:59 json.js
-rwxrwxrwx 1 root root     83 Jan  3 19:59 json.js.map
-rwxrwxrwx 1 root root 486950 Jan  3 19:59 livedata.js
-rwxrwxrwx 1 root root 159409 Jan  3 19:59 livedata.js.map
-rwxrwxrwx 1 root root  26681 Jan  3 19:59 logging.js
-rwxrwxrwx 1 root root  10299 Jan  3 19:59 logging.js.map
-rwxrwxrwx 1 root root  99884 Jan  3 19:59 marked.js
-rwxrwxrwx 1 root root  33617 Jan  3 19:59 marked.js.map
-rwxrwxrwx 1 root root 117915 Jan  3 19:59 meteor.js
-rwxrwxrwx 1 root root  38384 Jan  3 19:59 meteor.js.map
-rwxrwxrwx 1 root root 345015 Jan  3 19:59 minimongo.js
-rwxrwxrwx 1 root root 129871 Jan  3 19:59 minimongo.js.map
-rwxrwxrwx 1 root root 366752 Jan  3 19:59 mongo-livedata.js
-rwxrwxrwx 1 root root 143322 Jan  3 19:59 mongo-livedata.js.map
-rwxrwxrwx 1 root root  19268 Jan  3 19:59 ordered-dict.js
-rwxrwxrwx 1 root root   7481 Jan  3 19:59 ordered-dict.js.map
-rwxrwxrwx 1 root root    203 Jan  3 19:59 preserve-inputs.js
-rwxrwxrwx 1 root root     95 Jan  3 19:59 preserve-inputs.js.map
-rwxrwxrwx 1 root root  20606 Jan  3 19:59 random.js
-rwxrwxrwx 1 root root   8277 Jan  3 19:59 random.js.map
-rwxrwxrwx 1 root root    161 Jan  3 19:59 reload.js
-rwxrwxrwx 1 root root     85 Jan  3 19:59 reload.js.map
-rwxrwxrwx 1 root root  15797 Jan  3 19:59 routepolicy.js
-rwxrwxrwx 1 root root   5460 Jan  3 19:59 routepolicy.js.map
-rwxrwxrwx 1 root root  35844 Jan  3 19:59 router.js
-rwxrwxrwx 1 root root  10422 Jan  3 19:59 router.js.map
-rwxrwxrwx 1 root root    162 Jan  3 19:59 session.js
-rwxrwxrwx 1 root root     86 Jan  3 19:59 session.js.map
-rwxrwxrwx 1 root root    160 Jan  3 19:59 spark.js
-rwxrwxrwx 1 root root     84 Jan  3 19:59 spark.js.map
-rwxrwxrwx 1 root root  13828 Jan  3 19:59 spiderable.js
-rwxrwxrwx 1 root root   5456 Jan  3 19:59 spiderable.js.map
-rwxrwxrwx 1 root root    227 Jan  3 19:59 standard-app-packages.js
-rwxrwxrwx 1 root root    101 Jan  3 19:59 standard-app-packages.js.map
-rwxrwxrwx 1 root root    165 Jan  3 19:59 templating.js
-rwxrwxrwx 1 root root     89 Jan  3 19:59 templating.js.map
-rwxrwxrwx 1 root root 146621 Jan  3 19:59 underscore.js
-rwxrwxrwx 1 root root  54534 Jan  3 19:59 underscore.js.map
-rwxrwxrwx 1 root root  83198 Jan  3 19:59 webapp.js
-rwxrwxrwx 1 root root  30430 Jan  3 19:59 webapp.js.map
-rwxrwxrwx 1 root root 16777216 Jan  3 19:59 local.0
-rwxrwxrwx 1 root root 33554432 Dec 29 12:36 local.1
-rwxrwxrwx 1 root root 16777216 Jan  3 19:59 local.ns
-rwxrwxrwx 1 root root        4 Dec 29 12:36 METEOR-PORT
-rwxrwxrwx 1 root root        0 Jan  3 21:05 mongod.lock

And here as root:

drwxrwxrwx 4 root root 4096 Jan  3 19:59 local
-rwxrwxrwx 1 root root  220 Jan  3 11:51 packages
-rwxrwxrwx 1 root root    8 Dec 29 12:35 release
drwxrwxrwx 4 root    root 4096 Jan  3 19:59 build
drwxrwxrwx 2 vagrant root 4096 Dec 29 12:39 db
-rwxrwxrwx 1 root root  151 Jan  3 19:59 main.js
drwxrwxrwx 5 root root 4096 Jan  3 19:59 programs
-rwxrwxrwx 1 root root  650 Jan  3 19:59 README
drwxrwxrwx 2 root root 4096 Jan  3 19:59 server
-rwxrwxrwx 1 root root  459 Jan  3 19:59 star.json
drwxrwxrwx 4 root root 4096 Jan  3 19:59 client
drwxrwxrwx 4 root root 4096 Jan  3 19:59 ctl
drwxrwxrwx 5 root root 4096 Jan  3 19:59 server
drwxrwxrwx 3 root root  4096 Jan  3 19:59 app
-rwxrwxrwx 1 root root  5836 Jan  3 19:59 app.html
drwxrwxrwx 2 root root  4096 Jan  3 19:59 packages
-rwxrwxrwx 1 root root 16184 Jan  3 19:59 program.json
drwxrwxrwx 3 root root 4096 Jan  3 19:59 app
drwxrwxrwx 3 root root 4096 Jan  3 19:59 lib
-rwxrwxrwx 1 root root 1429 Jan  3 19:59 main.css
-rwxrwxrwx 1 root root 4153 Jan  3 19:59 main.js
-rwxrwxrwx 1 root root  395 Jan  3 19:59 template.main.js
-rwxrwxrwx 1 root root  337 Jan  3 19:59 template.templates.js
drwxrwxrwx 3 root root 4096 Jan  3 19:59 highlight.js
-rwxrwxrwx 1 root root 17848 Jan  3 19:59 highlight.pack.js
drwxrwxrwx 2 root root  4096 Jan  3 19:59 styles
-rwxrwxrwx 1 root root 2552 Jan  3 19:59 default.css
-rwxrwxrwx 1 root root    1557 Jan  3 19:59 application-configuration.js
-rwxrwxrwx 1 root root     131 Jan  3 19:59 application-configuration.js.map
-rwxrwxrwx 1 root root   10296 Jan  3 19:59 autoupdate.js
-rwxrwxrwx 1 root root    4344 Jan  3 19:59 autoupdate.js.map
-rwxrwxrwx 1 root root   30962 Jan  3 19:59 check.js
-rwxrwxrwx 1 root root   13769 Jan  3 19:59 check.js.map
-rwxrwxrwx 1 root root   34115 Jan  3 19:59 deps.js
-rwxrwxrwx 1 root root   12796 Jan  3 19:59 deps.js.map
-rwxrwxrwx 1 root root   59298 Jan  3 19:59 domutils.js
-rwxrwxrwx 1 root root   25408 Jan  3 19:59 domutils.js.map
-rwxrwxrwx 1 root root   67567 Jan  3 19:59 ejson.js
-rwxrwxrwx 1 root root   21692 Jan  3 19:59 ejson.js.map
-rwxrwxrwx 1 root root    1562 Jan  3 19:59 follower-livedata.js
-rwxrwxrwx 1 root root     125 Jan  3 19:59 follower-livedata.js.map
-rwxrwxrwx 1 root root   48406 Jan  3 19:59 geojson-utils.js
-rwxrwxrwx 1 root root   15990 Jan  3 19:59 geojson-utils.js.map
-rwxrwxrwx 1 root root     493 Jan  3 19:59 global-imports.js
-rwxrwxrwx 1 root root   37547 Jan  3 19:59 handlebars.js
-rwxrwxrwx 1 root root   16703 Jan  3 19:59 handlebars.js.map
-rwxrwxrwx 1 root root 1202072 Jan  3 19:59 jquery.js
-rwxrwxrwx 1 root root  366987 Jan  3 19:59 jquery.js.map
-rwxrwxrwx 1 root root   58410 Jan  3 19:59 json.js
-rwxrwxrwx 1 root root   21539 Jan  3 19:59 json.js.map
-rwxrwxrwx 1 root root  560614 Jan  3 19:59 livedata.js
-rwxrwxrwx 1 root root  189125 Jan  3 19:59 livedata.js.map
-rwxrwxrwx 1 root root   62132 Jan  3 19:59 liverange.js
-rwxrwxrwx 1 root root   29655 Jan  3 19:59 liverange.js.map
-rwxrwxrwx 1 root root   27875 Jan  3 19:59 logging.js
-rwxrwxrwx 1 root root   10321 Jan  3 19:59 logging.js.map
-rwxrwxrwx 1 root root  102074 Jan  3 19:59 marked.js
-rwxrwxrwx 1 root root   33820 Jan  3 19:59 marked.js.map
-rwxrwxrwx 1 root root   82210 Jan  3 19:59 meteor.js
-rwxrwxrwx 1 root root   26826 Jan  3 19:59 meteor.js.map
-rwxrwxrwx 1 root root  323368 Jan  3 19:59 minimongo.js
-rwxrwxrwx 1 root root  121486 Jan  3 19:59 minimongo.js.map
-rwxrwxrwx 1 root root  102219 Jan  3 19:59 mongo-livedata.js
-rwxrwxrwx 1 root root   39683 Jan  3 19:59 mongo-livedata.js.map
-rwxrwxrwx 1 root root   20462 Jan  3 19:59 ordered-dict.js
-rwxrwxrwx 1 root root    7503 Jan  3 19:59 ordered-dict.js.map
-rwxrwxrwx 1 root root   53364 Jan  3 19:59 page-js-ie-support.js
-rwxrwxrwx 1 root root   13636 Jan  3 19:59 page-js-ie-support.js.map
-rwxrwxrwx 1 root root    2558 Jan  3 19:59 preserve-inputs.js
-rwxrwxrwx 1 root root     471 Jan  3 19:59 preserve-inputs.js.map
-rwxrwxrwx 1 root root   21800 Jan  3 19:59 random.js
-rwxrwxrwx 1 root root    8299 Jan  3 19:59 random.js.map
-rwxrwxrwx 1 root root   13878 Jan  3 19:59 reactive-dict.js
-rwxrwxrwx 1 root root    5176 Jan  3 19:59 reactive-dict.js.map
-rwxrwxrwx 1 root root   19595 Jan  3 19:59 reload.js
-rwxrwxrwx 1 root root    7551 Jan  3 19:59 reload.js.map
-rwxrwxrwx 1 root root   44685 Jan  3 19:59 router.js
-rwxrwxrwx 1 root root   13728 Jan  3 19:59 router.js.map
-rwxrwxrwx 1 root root    3314 Jan  3 19:59 session.js
-rwxrwxrwx 1 root root     661 Jan  3 19:59 session.js.map
-rwxrwxrwx 1 root root  204184 Jan  3 19:59 spark.js
-rwxrwxrwx 1 root root   83409 Jan  3 19:59 spark.js.map
-rwxrwxrwx 1 root root    1466 Jan  3 19:59 spiderable.js
-rwxrwxrwx 1 root root     114 Jan  3 19:59 spiderable.js.map
-rwxrwxrwx 1 root root    1457 Jan  3 19:59 standard-app-packages.js
-rwxrwxrwx 1 root root     124 Jan  3 19:59 standard-app-packages.js.map
-rwxrwxrwx 1 root root    1356 Jan  3 19:59 startup.js
-rwxrwxrwx 1 root root     108 Jan  3 19:59 startup.js.map
-rwxrwxrwx 1 root root   24071 Jan  3 19:59 templating.js
-rwxrwxrwx 1 root root    9422 Jan  3 19:59 templating.js.map
-rwxrwxrwx 1 root root  147815 Jan  3 19:59 underscore.js
-rwxrwxrwx 1 root root   54556 Jan  3 19:59 underscore.js.map
-rwxrwxrwx 1 root root   59722 Jan  3 19:59 universal-events.js
-rwxrwxrwx 1 root root   28310 Jan  3 19:59 universal-events.js.map
-rwxrwxrwx 1 root root    1355 Jan  3 19:59 webapp.js
-rwxrwxrwx 1 root root     107 Jan  3 19:59 webapp.js.map
-rwxrwxrwx 1 root root 6411 Jan  3 19:59 boot.js
-rwxrwxrwx 1 root root   32 Jan  3 19:59 config.json
lrwxrwxrwx 1 root root   47 Jan  3 19:59 node_modules -> /root/.meteor/tools/09b63f1ed5/lib/node_modules
drwxrwxrwx 6 root root 4096 Jan  3 19:59 npm
drwxrwxrwx 2 root root 4096 Jan  3 19:59 packages
-rwxrwxrwx 1 root root 2603 Jan  3 19:59 program.json
-rwxrwxrwx 1 root root 2716 Jan  3 19:59 start.sh
drwxrwxrwx 3 root root 4096 Jan  3 19:59 ctl-helper
drwxrwxrwx 3 root root 4096 Jan  3 19:59 livedata
drwxrwxrwx 3 root root 4096 Jan  3 19:59 logging
drwxrwxrwx 3 root root 4096 Jan  3 19:59 mongo-livedata
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 61 Jan  3 19:59 node_modules -> /root/.meteor/packages/ctl-helper/d6214568fb/npm/node_modules
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 59 Jan  3 19:59 node_modules -> /root/.meteor/packages/livedata/f69d9149dd/npm/node_modules
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 58 Jan  3 19:59 node_modules -> /root/.meteor/packages/logging/04f04cd832/npm/node_modules
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 65 Jan  3 19:59 node_modules -> /root/.meteor/packages/mongo-livedata/133ed3e7a3/npm/node_modules
-rwxrwxrwx 1 root root  14673 Jan  3 19:59 application-configuration.js
-rwxrwxrwx 1 root root   5102 Jan  3 19:59 application-configuration.js.map
-rwxrwxrwx 1 root root  29768 Jan  3 19:59 check.js
-rwxrwxrwx 1 root root  13747 Jan  3 19:59 check.js.map
-rwxrwxrwx 1 root root  21450 Jan  3 19:59 ctl-helper.js
-rwxrwxrwx 1 root root   8410 Jan  3 19:59 ctl-helper.js.map
-rwxrwxrwx 1 root root  14131 Jan  3 19:59 ctl.js
-rwxrwxrwx 1 root root   5110 Jan  3 19:59 ctl.js.map
-rwxrwxrwx 1 root root  32921 Jan  3 19:59 deps.js
-rwxrwxrwx 1 root root  12774 Jan  3 19:59 deps.js.map
-rwxrwxrwx 1 root root  66343 Jan  3 19:59 ejson.js
-rwxrwxrwx 1 root root  21669 Jan  3 19:59 ejson.js.map
-rwxrwxrwx 1 root root  26264 Jan  3 19:59 follower-livedata.js
-rwxrwxrwx 1 root root   9274 Jan  3 19:59 follower-livedata.js.map
-rwxrwxrwx 1 root root  47212 Jan  3 19:59 geojson-utils.js
-rwxrwxrwx 1 root root  15968 Jan  3 19:59 geojson-utils.js.map
-rwxrwxrwx 1 root root    159 Jan  3 19:59 json.js
-rwxrwxrwx 1 root root     83 Jan  3 19:59 json.js.map
-rwxrwxrwx 1 root root 486950 Jan  3 19:59 livedata.js
-rwxrwxrwx 1 root root 159409 Jan  3 19:59 livedata.js.map
-rwxrwxrwx 1 root root  26681 Jan  3 19:59 logging.js
-rwxrwxrwx 1 root root  10299 Jan  3 19:59 logging.js.map
-rwxrwxrwx 1 root root 117915 Jan  3 19:59 meteor.js
-rwxrwxrwx 1 root root  38384 Jan  3 19:59 meteor.js.map
-rwxrwxrwx 1 root root 345015 Jan  3 19:59 minimongo.js
-rwxrwxrwx 1 root root 129871 Jan  3 19:59 minimongo.js.map
-rwxrwxrwx 1 root root 366752 Jan  3 19:59 mongo-livedata.js
-rwxrwxrwx 1 root root 143322 Jan  3 19:59 mongo-livedata.js.map
-rwxrwxrwx 1 root root  19268 Jan  3 19:59 ordered-dict.js
-rwxrwxrwx 1 root root   7481 Jan  3 19:59 ordered-dict.js.map
-rwxrwxrwx 1 root root  20606 Jan  3 19:59 random.js
-rwxrwxrwx 1 root root   8277 Jan  3 19:59 random.js.map
-rwxrwxrwx 1 root root 146621 Jan  3 19:59 underscore.js
-rwxrwxrwx 1 root root  54534 Jan  3 19:59 underscore.js.map
drwxrwxrwx 3 root root 4096 Jan  3 19:59 app
-rwxrwxrwx 1 root root 6411 Jan  3 19:59 boot.js
-rwxrwxrwx 1 root root   70 Jan  3 19:59 config.json
lrwxrwxrwx 1 root root   47 Jan  3 19:59 node_modules -> /root/.meteor/tools/09b63f1ed5/lib/node_modules
drwxrwxrwx 8 root root 4096 Jan  3 19:59 npm
drwxrwxrwx 2 root root 4096 Jan  3 19:59 packages
-rwxrwxrwx 1 root root 4508 Jan  3 19:59 program.json
-rwxrwxrwx 1 root root 2716 Jan  3 19:59 start.sh
drwxrwxrwx 3 root root 4096 Jan  3 19:59 app
drwxrwxrwx 3 root root 4096 Jan  3 19:59 lib
-rwxrwxrwx 1 root root 4153 Jan  3 19:59 main.js
drwxrwxrwx 2 root root 4096 Jan  3 19:59 highlight.js
-rwxrwxrwx 1 root root 17848 Jan  3 19:59 highlight.pack.js
drwxrwxrwx 3 root root 4096 Jan  3 19:59 handlebars
drwxrwxrwx 3 root root 4096 Jan  3 19:59 livedata
drwxrwxrwx 3 root root 4096 Jan  3 19:59 logging
drwxrwxrwx 3 root root 4096 Jan  3 19:59 mongo-livedata
drwxrwxrwx 3 root root 4096 Jan  3 19:59 router
drwxrwxrwx 3 root root 4096 Jan  3 19:59 webapp
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 61 Jan  3 19:59 node_modules -> /root/.meteor/packages/handlebars/0a8b732b9d/npm/node_modules
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 59 Jan  3 19:59 node_modules -> /root/.meteor/packages/livedata/f69d9149dd/npm/node_modules
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 58 Jan  3 19:59 node_modules -> /root/.meteor/packages/logging/04f04cd832/npm/node_modules
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 65 Jan  3 19:59 node_modules -> /root/.meteor/packages/mongo-livedata/133ed3e7a3/npm/node_modules
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 51 Jan  3 19:59 node_modules -> /var/www/tk/packages/router/.build/npm/node_modules
drwxrwxrwx 2 root root 4096 Jan  3 19:59 main
lrwxrwxrwx 1 root root 57 Jan  3 19:59 node_modules ->

--- cut off because of limits ---

Solution

This is a list of steps to reinstall meteor and meteorite

Uninstall meteor

sudo rm /usr/local/bin/meteor
rm -rf ~/.meteor

Uninstall meteorite

sudo mrt uninstall
sudo mrt uninstall --system
sudo chown -R `whoami` ~/.npm

The last command is to make sure that ~/.npm permissions are correct.

Install meteor

curl https://install.meteor.com | sh

Install meteorite

sudo -H npm install -g meteorite