I have a Pandas DataFrame as below.
df
A B
date_time
2014-07-01 06:03:59.614000 62.1250 NaN
2014-07-01 06:03:59.692000 62.2500 NaN
2014-07-01 06:13:34.524000 62.2500 241.0625
2014-07-01 06:13:34.602000 62.2500 241.5000
2014-07-01 06:15:05.399000 62.2500 241.3750
2014-07-01 06:15:05.399000 62.2500 241.2500
2014-07-01 06:15:42.004000 62.2375 241.2500
2014-07-01 06:15:42.082000 62.2375 241.3750
2014-07-01 06:15:42.082000 62.2375 240.2500
I want to change the frequency of this to regular 1 minute intervals. But get the error below:
new = df.asfreq('1Min')
>>error: cannot reindex from a duplicate axis
Now, I understand why this is happening. Since my time granularity is high (in milliseconds) but irregular, I get multiple readings per minute, even per second. So I tried to combine these millisecond readings to minutes and get rid of duplicates as below.
# try to convert the index to minutes and drop duplicates
df['index'] = df.index
df['minute_index']= df['index'].apply( lambda x: x.strftime('%Y-%m-%d %H:%M'))
df.drop_duplicates(cols = 'minute_index', inplace = True, take_last = True)
df_by_minute = df.set_index('minute_index')
df_by_minute
A B index
minute_index
2014-07-01 06:03 62.2500 NaN 2014-07-01 06:03:59.692000
2014-07-01 06:13 62.2500 241.50 2014-07-01 06:13:34.602000
2014-07-01 06:15 62.2375 240.25 2014-07-01 06:15:42.082000
# now change the frequency to 1 minute but I just get NaNs (!)
df_by_minute.asfreq('1Min')
A B index
2014-07-01 06:03:00 NaN NaN NaT
2014-07-01 06:04:00 NaN NaN NaT
2014-07-01 06:05:00 NaN NaN NaT
2014-07-01 06:06:00 NaN NaN NaT
2014-07-01 06:07:00 NaN NaN NaT
2014-07-01 06:08:00 NaN NaN NaT
2014-07-01 06:09:00 NaN NaN NaT
2014-07-01 06:10:00 NaN NaN NaT
2014-07-01 06:11:00 NaN NaN NaT
2014-07-01 06:12:00 NaN NaN NaT
2014-07-01 06:13:00 NaN NaN NaT
2014-07-01 06:14:00 NaN NaN NaT
2014-07-01 06:15:00 NaN NaN NaT
As you see it does not work.. Can someone help? What I am trying to achieve is to get a function that returns A or B as of DateTime and DateTime would be in 1Min increments.
I think, not asfreq but resample fits your needs:
new = df.resample('T', how='mean')
For how option, you can also use 'last' or 'first'.