Remove duplicates from custom entities in Microsoft Dynamics CRM

Has anyone found a good way to either merge or remove duplicates that are in custom entities? In our case we have two custom entities, literature history and subscriptions which relate contacts back to a custom entity named literature.

I can run a duplicate detection job, but this returns thousands of records and deleting them one at a time is impractical at best. We would like to either be able to merge them or just delete the duplicates. However, much Google searching has not turned up any good suggestions other than "you can write something."

Okay, but where to even get started? Should I be bulk deleting from the duplicate detection job? Should I try just writing a quick and dirty c# program with the SDK? Is there a way to merge custom entities that just requires some magical workflow voodoo?

EDIT: FYI What I eventually did was setting the deletion state code using some fun SQL to quickly find duplicates:

UPDATE T1 SET DeletionStateCode = 2 
FROM New_subscriptionhistory T1 INNER JOIN New_subscriptionhistory T2 ON t1.New_LiteratureId = T2.New_LiteratureId AND t1.New_ContactId = t2.New_ContactId
AND t1.CreatedOn > t2.CreatedOn AND t1.statecode = 0 AND t2.statecode = 0

You should look into creating a Bulk Delete Job using the SDK.

Here's a short tutorial.