pythonjsonpandasdataframeflatten

How to flatten a pandas dataframe with some columns as json?


I have a dataframe df that loads data from a database. Most of the columns are json strings while some are even list of jsons. For example:

id     name     columnA                               columnB
1     John     {"dist": "600", "time": "0:12.10"}    [{"pos": "1st", "value": "500"},{"pos": "2nd", "value": "300"},{"pos": "3rd", "value": "200"}, {"pos": "total", "value": "1000"}]
2     Mike     {"dist": "600"}                       [{"pos": "1st", "value": "500"},{"pos": "2nd", "value": "300"},{"pos": "total", "value": "800"}]
...

As you can see, not all the rows have the same number of elements in the json strings for a column.

What I need to do is keep the normal columns like id and name as it is and flatten the json columns like so:

id    name   columnA.dist   columnA.time   columnB.pos.1st   columnB.pos.2nd   columnB.pos.3rd     columnB.pos.total
1     John   600            0:12.10        500               300               200                 1000 
2     Mark   600            NaN            500               300               Nan                 800 

I have tried using json_normalize like so:

from pandas.io.json import json_normalize
json_normalize(df)

But there seems to be some problems with keyerror. What is the correct way of doing this?


Solution

  • Here's a solution using json_normalize() again by using a custom function to get the data in the correct format understood by json_normalize function.

    import ast
    from pandas.io.json import json_normalize
    
    def only_dict(d):
        '''
        Convert json string representation of dictionary to a python dict
        '''
        return ast.literal_eval(d)
    
    def list_of_dicts(ld):
        '''
        Create a mapping of the tuples formed after 
        converting json strings of list to a python list   
        '''
        return dict([(list(d.values())[1], list(d.values())[0]) for d in ast.literal_eval(ld)])
    
    A = json_normalize(df['columnA'].apply(only_dict).tolist()).add_prefix('columnA.')
    B = json_normalize(df['columnB'].apply(list_of_dicts).tolist()).add_prefix('columnB.pos.') 
    

    Finally, join the DFs on the common index to get:

    df[['id', 'name']].join([A, B])
    

    Image


    EDIT:- As per the comment by @MartijnPieters, the recommended way of decoding the json strings would be to use json.loads() which is much faster when compared to using ast.literal_eval() if you know that the data source is JSON.