I use following args for my script with doctopt
Usage:
GaussianMixture.py --snpList=File --callingRAC=File
Options:
-h --help Show help.
snpList list snp txt
callingRAC results snp
I would like to add an argument that have a conditional consequence on my script : correct my datas or don't correct my datas. Something like :
Usage:
GaussianMixture.py --snpList=File --callingRAC=File correction(--0 | --1)
Options:
-h --help Show help.
snpList list snp txt
callingRAC results snp
correction 0 : without correction | 1 : with correction
And I would like to add in my script an if in some functions
def func1():
if args[correction] == 0:
datas = non_corrected_datas
if args[correction] == 1:
datas = corrected_datas
But I don't know how to write it in the usage neither in my script.
EDIT: My original answer didn't take into account OP's requirements for --correction to be mandatory. Syntax was incorrect in my original answer. Here's a tested working example:
#!/usr/bin/env python
"""Usage:
GaussianMixture.py --snpList=File --callingRAC=File --correction=<BOOL>
Options:
-h, --help Show this message and exit.
-V, --version Show the version and exit
--snpList list snp txt
--callingRAC results snp
--correction=BOOL Perform correction? True or False. [default: True]
"""
__version__ = '0.0.1'
from docopt import docopt
def main(args):
args = docopt(__doc__, version=__version__)
print(args)
if args['--correction'] == 'True':
print("True")
else:
print("False")
if __name__ == '__main__':
args = docopt(__doc__, version=__version__)
main(args)
Please let me know if this works for you.