arraysmatlabperformancebsxfun

How much faster is implicit expansion compared with bsxfun?


As commented by Steve Eddins, implicit expansion (introduced in Matlab R2016b) is faster than bsxfun for small array sizes, and has similar speed for large arrays:

In R2016b, implicit expansion works as fast or faster than bsxfun in most cases. The best performance gains for implicit expansion are with small matrix and array sizes. For large matrix sizes, implicit expansion tends to be roughly the same speed as bsxfun.

Also, the dimension along which expansion takes place may have an influence:

When there is an expansion in the first dimension, the operators might not be quite as fast as bsxfun.

(Thanks to @Poelie and @rayryeng for letting me know about this!)

Two questions naturally arise:


Solution

  • To measure the difference in speed, some tests have been done. The tests consider two different operations:

    and four different shapes of the arrays to be operated on:

    For each of the eight combinations of operation and array shapes, the same operation is done with implicit expansion and with bsxfun. Several values of N are used, to cover the range from small to large arrays. timeit is used for reliable timing.

    The benchmarking code is given at the end of this answer. It has been run on Matlab R2016b, Windows 10, with 12 GB RAM.

    Results

    The following graphs show the results. The horizontal axis is the number of elements of the output array, which is a better measure of size than N is.

    enter image description here enter image description here

    Tests have also been done with logical operations (instead of arithmetical). The results are not displayed here for brevity, but show a similar trend.

    Conclusions

    According to the graphs:

    Since the speed improvement is only significant when the arrays are small, which is a situation in which either approach is very fast anyway, using implicit expansion or bsxfun seems to be mainly a matter of taste, readability, or backward compatibility.

    Benchmarking code

    clear
    
    % NxN, Nx1, addition / power
    N1 = 2.^(4:1:12);
    t1_bsxfun_add = NaN(size(N1));
    t1_implicit_add = NaN(size(N1));
    t1_bsxfun_pow = NaN(size(N1));
    t1_implicit_pow = NaN(size(N1));
    for k = 1:numel(N1)
        N = N1(k);
        x = randn(N,N);
        y = randn(N,1);
        % y = randn(1,N); % use this line or the preceding one
        t1_bsxfun_add(k) = timeit(@() bsxfun(@plus, x, y));
        t1_implicit_add(k) = timeit(@() x+y);
        t1_bsxfun_pow(k) = timeit(@() bsxfun(@power, x, y));
        t1_implicit_pow(k) = timeit(@() x.^y);
    end
    
    % NxNxNxN, Nx1xN, addition / power
    N2 = round(sqrt(N1));
    t2_bsxfun_add = NaN(size(N2));
    t2_implicit_add = NaN(size(N2));
    t2_bsxfun_pow = NaN(size(N2));
    t2_implicit_pow = NaN(size(N2));
    for k = 1:numel(N1)
        N = N2(k);
        x = randn(N,N,N,N);
        y = randn(N,1,N);
        % y = randn(1,N,N); % use this line or the preceding one
        t2_bsxfun_add(k) = timeit(@() bsxfun(@plus, x, y));
        t2_implicit_add(k) = timeit(@() x+y);
        t2_bsxfun_pow(k) = timeit(@() bsxfun(@power, x, y));
        t2_implicit_pow(k) = timeit(@() x.^y);
    end
    
    % Plots
    figure
    colors = get(gca,'ColorOrder');
    
    subplot(121)
    title('N\times{}N,   N\times{}1')
    % title('N\times{}N,   1\times{}N') % this or the preceding
    set(gca,'XScale', 'log', 'YScale', 'log')
    hold on
    grid on
    loglog(N1.^2, t1_bsxfun_add, 's-', 'color', colors(1,:))
    loglog(N1.^2, t1_implicit_add, 's-', 'color', colors(2,:))
    loglog(N1.^2, t1_bsxfun_pow, '^-', 'color', colors(1,:))
    loglog(N1.^2, t1_implicit_pow, '^-', 'color', colors(2,:))
    legend('Addition, bsxfun', 'Addition, implicit', 'Power, bsxfun', 'Power, implicit')
    
    subplot(122)
    title('N\times{}N\times{}N{}\times{}N,   N\times{}1\times{}N')
    % title('N\times{}N\times{}N{}\times{}N,   1\times{}N\times{}N') % this or the preceding
    set(gca,'XScale', 'log', 'YScale', 'log')
    hold on
    grid on
    loglog(N2.^4, t2_bsxfun_add, 's-', 'color', colors(1,:))
    loglog(N2.^4, t2_implicit_add, 's-', 'color', colors(2,:))
    loglog(N2.^4, t2_bsxfun_pow, '^-', 'color', colors(1,:))
    loglog(N2.^4, t2_implicit_pow, '^-', 'color', colors(2,:))
    legend('Addition, bsxfun', 'Addition, implicit', 'Power, bsxfun', 'Power, implicit')