I have a protein network loaded into cytoscape. I want to get the network nodes into a shape that corresponds that of the protein shape/structure. This is so that I can superimpose the network image onto the protein structure image. I tried RINanalyzer and structureviz2, but it didn't help. Any solutions?
Can you be more specific about what didn't work with RINalyzer and structureViz2? The layout provided by RINalyzer usually does a pretty good job for me.