pythonmatplotlibdatashader

Add datashader image to matplotlib subplots


Is it possible to add a datashader image to a set of matplotlib subplots?

As a concrete example,

import numpy as np
import pandas as pd
import matplotlib.pylab as plt

import datashader as ds
import datashader.transfer_functions as tf
from datashader.utils import export_image

from functools import partial

background = "white"
export = partial(export_image, background = background, export_path="export")

N = 10000
df = pd.DataFrame(np.random.random((N, 3)), columns = ['x','y', 'z'])

f, ax = plt.subplots(2, 2)
ax_r = ax.ravel()

ax_r[0].scatter(df['x'], df['y'], df['z'].mean())
ax_r[1].hist(df['x'])
ax_r[2].hist(df['y'])
ax_r[3].plot(df['z'])

cvs = ds.Canvas(plot_width=100, plot_height=100)
agg = cvs.points(df, 'x', 'y', ds.mean('z'))
a = export(tf.shade(agg, cmap=['lightblue', 'darkblue'], how='eq_hist'), 'test')

Where I have a two by two array of matplotlib subplots and would like to replace the [0,0] plot ax_r[0] in the above example with the datashader image a. Is this possible, and if so, how?

Thanks!


Solution

  • Update [January 2021] Datashader 0.12 now includes native Matplotlib support as per comment from James A. Bednar below.

    As of right now [May 2017] the best way to accomplish adding a datashader image to a matplotlib subplot is to use the pull request linked to above. It defines a DSArtist class. Assuming the DSArtist class exists, the code would be as follows:

    N = 10000
    df = pd.DataFrame(np.random.random((N, 3)), columns = ['x','y', 'z'])
    
    f, ax = plt.subplots(2, 2)
    ax_r = ax.ravel()
    
    da = DSArtist(ax_r[0], df, 'x', 'y', ds.mean('z'), norm = mcolors.LogNorm())
    ax_r[0].add_artist(da)
    
    ax_r[1].hist(df['x'])
    ax_r[2].hist(df['y'])
    ax_r[3].plot(df['z'])
    
    plt.tight_layout()
    plt.show()