I'm using vis.js to display nodes, not all nodes are connected to each other, but they are overlapping as shown in the picture, is there a way with the option to avoid this, I went through the configure options but could not find.
I would recommend using manual configuration for physics and layout:
configure: {
enabled: true,
filter: 'physics, layout',
showButton: true
}
and try to play with nodeDistance and nodeSpacing.