I'm new to Starcluster software and I'm currently trying to compile my first complex program in a 3 node cluster.
I followed the instructions of cluster creation, placed the files in the sgeadmin folder and tried to compile. The following error pops up:
sgeadmin@master:~$ make
Building file: MyApp.cpp
Invoking: GCC C++ Compiler
mpiCC -std=c++0x -O3 -Wall -c -fmessage-length=0 -MMD -MP -MF"MyApp.d" -MT"MyApp.d" -o "MyApp.o" "MyApp.cpp"
In file included from /usr/lib/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:201:0,
from /usr/lib/openmpi/include/mpi.h:1886,
from SAXPopulation.hpp:19,
from MyApp.hpp:15,
from MyApp.cpp:8:
/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx/constants.h:94:37: error: expected unqualified-id before numeric constant
/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx/constants.h:96:37: error: expected unqualified-id before numeric constant
make: *** [MyApp.o] Error 1
It seems like a problem in mpi.h, but starcluster is supposed to install it all for you... I tried to find solutions only but did not have success in finding an answer... Anyone has ever reached this error?
Thanks in advance,
Bernardo
EDIT MyApp.cpp first 8 lines
//============================================================================
// Name : MyApp.cpp
// Author : ****
// Version :
// Copyright : Your copyright notice
//============================================================================
#include "MyApp.hpp"
#include <mpi.h>
(mpi.h is line 9)
MyAp.hpp first 15 lines
/*
* MyApp.h
*
* Created on: *****
* Author: ****
*/
#ifndef MYAPP_H_
#define MYAPP_H_
#include <stdio.h>
#include <string.h>
#include <fstream>
#include <dirent.h>
#include "SAXPopulation.hpp"
SAXPopulation.hpp first 18 lines
/*
* SAXPopulation.hpp
*
* Created on: ****
* Author: ***
*/
#ifndef SAXPOPULATION_HPP_
#define SAXPOPULATION_HPP_
#include <stdio.h>
#include <string>
#include <stdlib.h>
#include <vector>
#include "MersenneTwister.h"
#include "SAXChromo.hpp"
#include <algorithm>
#include "Stock.hpp"
#include <mpi.h>
(last line is 19)
Try adding this to the compilation line:
-DOMPI_SKIP_MPICXX