I'm trying to create a plot using ggplot2 (v. 2_2.2.1) facet_wrap
, and I need to have a Greek symbol in only one facet label (out of five). I have tried to use code posted here on Stack Overflow:
but without any success (getGrob is not working, and that's true also for the mf_labeller).
Can anyone help me with that?
Here is the example code:
df <- data.frame(genes = rep(c("BA","MLL","pos","neg","PMLalpha+"),5), value = sample(1:100, 25, replace=TRUE))
df$genes <- factor(df$genes, levels = c("BA","MLL","pos","neg","PMLalpha+"), ordered = TRUE)
ggplot(df,aes(x=genes, y=value)) + geom_boxplot()+
facet_wrap(~genes, ncol = 5,scales = "free_x")+
scale_x_discrete(name="",
breaks = c("BA","MLL","pos","neg","PMLalpha+"),
labels = c("BA","MLL","pos","neg",expression(paste("PML", alpha,"+"))))
I'm able to rename the x-axis tick, but I just can't do that within the facet labels.
Here is a trick that uses labeller=label_parsed
.
First, define labels for df$genes
that uses the expression to be parsed:
df$genes <- factor(df$genes, levels = c("BA","MLL","pos","neg","PMLalpha+"),
ordered = TRUE, labels=c("BA","MLL","pos","neg",expression(paste("PML", alpha,"+"))))
Then use labeller=label_parsed
in facet_wrap
:
ggplot(df,aes(x=genes, y=value)) + geom_boxplot() +
facet_wrap(~genes, ncol = 5, scales = "free_x", labeller = label_parsed)
As you can see this messes with the x-axis labels, but you can fix it in scale_x_discrete
as follows:
ggplot(df,aes(x=genes, y=value)) + geom_boxplot() +
facet_wrap(~genes, ncol = 5, scales = "free_x", labeller = label_parsed) +
scale_x_discrete(name="",
breaks = c("BA","MLL","pos","neg","paste(\"PML\", alpha, \"+\")"),
labels = c("BA","MLL","pos","neg", expression(paste("PML", alpha,"+"))))
Edit: In response to follow-up question posted, here is the solution for using label_parsed
for more than one variable. Includes requested space in the variable strings.
df$var2 <- c(rep(c('trt a','trt b'), NROW(df)/2),'trt a')
df$var2 <- factor(df$var2, levels=c('trt a','trt b'), ordered=T, labels=c(expression(paste("trt ", alpha)), expression(paste("trt ", beta))))
ggplot(df,aes(x=var2, y=value)) + geom_boxplot() +
facet_wrap(~var2, ncol = 5, scales = "free_x", labeller = label_parsed)
Fix the x-axis:
ggplot(df,aes(x=var2, y=value)) + geom_boxplot() +
facet_wrap(~var2, ncol = 5, scales = "free_x", labeller = label_parsed) +
scale_x_discrete(name="",
breaks = c(expression(paste("trt ", alpha)), expression(paste("trt ", beta))),
labels = c(expression(paste("trt ", alpha)), expression(paste("trt ", beta))))