rshinygeospatialr-leaflet

Empty SpatialPolygonsDataFrame object passed and will be skipped


I am sorry for cumbersome code in advance, but need some good help.

I will start from printscreens

So, 5 out of 6 filters in my Shiny app work perfectly:

Filtering by country

Filtering by country

Filtering by indicator 1

Filtering by indicator 2

Filtering by indicator 3

The problem arises when I try to create the sixth filter - called Indicator. And present the same data and in the same format as three last filters. Basically, I want to combine in Indicator filter three previous indicators. And filtering by one of three indicators to show circles for all 7 projects (based on one indicator). Does it make sense?

But the last code does not work. It shows me error

Warning in polygonData.SpatialPolygonsDataFrame(data) : Empty SpatialPolygonsDataFrame object passed and will be skipped

Unfortunately, I did not find too much about it. Can you please take a look at the end of the code, called Indicator, and help. I suspect that I have problems with proper subsetting of data at least.

Data can be taken here

Shapefiles can be taken here

So, the code itself

# Projects and Results Dashboard

# Packages (I played with different)
library(shiny)
library(shinythemes)
library(leaflet)
library(rgdal)
library(tidyverse)
library(geojsonio)
library(RColorBrewer)
library(highcharter)
library(plotly)
library(ggplot2)
library(xlsx)

# Set directory
setwd("C:~/App Projects and Results")

# Read csv, which was created specifically for this app
projects <- read.csv("Sample data3.csv", header = TRUE) 
names(projects)

# Read a shapefile
countries <- readOGR(".","ne_50m_admin_0_countries")

# Merge data
projects.df <- merge(countries, projects, by.x = "name", by.y = "Country")
class(projects.df)

# UI code
ui <- shinyUI(fluidPage(theme = shinytheme("united"),
                    titlePanel(HTML(# "<h1><center><font size=14> 
                      "Projects and Results Dashboard"
                    #</font></center></h1>"
                    )), 
                    sidebarLayout(
                      sidebarPanel(
                        selectInput("countryInput", "Country",
                                    choices = c("Choose country", "Senegal",
                                                "Nigeria",
                                                "Cameroon",
                                                "Dem. Rep. Congo",
                                                "Rwanda",
                                                "Tanzania", 
                                                "Madagascar"),
                                    selected = "Choose country"),
                        selectInput("projectInput", "Project",
                                    choices = c("Choose Project",  
                                                "Project 1",
                                                "Project 2",
                                                "Project 3",
                                                "Project 4",
                                                "Project 5",
                                                "Project 6",
                                                "Project 7"),
                                    selected = "Choose Project"),
                        selectInput("totalInput", "Total Funds",
                                    choices = c("Choose Project",  
                                                "Project 1",
                                                "Project 2",
                                                "Project 3",
                                                "Project 4",
                                                "Project 5",
                                                "Project 6",
                                                "Project 7"),
                                    selected = "Choose Project"),
                        selectInput("cashInput", "Client Cash",
                                    choices = c("Choose Project",  
                                                "Project 1",
                                                "Project 2",
                                                "Project 3",
                                                "Project 4",
                                                "Project 5",
                                                "Project 6",
                                                "Project 7"),
                                    selected = "Choose Project"),
                        selectInput("clientInput", "Total Client",
                                    choices = c("Choose Project",  
                                                "Project 1",
                                                "Project 2",
                                                "Project 3",
                                                "Project 4",
                                                "Project 5",
                                                "Project 6",
                                                "Project 7"),
                                    selected = "Choose Project"),
                        selectInput("indicatorInput", "Indicator",
                                    choices = c("Choose indicator",  
                                                "Total Funds ",
                                                "Client Cash",
                                                "Total Client"
                                                ),
                                    selected = "Choose indicator")
                      ),

                      mainPanel(leafletOutput(outputId = 'map', height = 800) 
                      )
                    )
))

# SERVER

server <- shinyServer(function(input, output) {
output$map <- renderLeaflet({
leaflet(projects.df) %>% 
  addProviderTiles(providers$Stamen.TonerLite) %>% 
  setView(11.0670977,0.912484, zoom = 4) 

})
# observers

# selected country
selectedCountry <- reactive({
projects.df[projects.df$name == input$countryInput, ] 
})
observe({
state_popup <- paste0("<strong>Country: </strong>", 
                      selectedCountry()$name, 
                      "<br><strong> Project: </strong>", 
                      selectedCountry()$Project,
                      "<br><strong> Total Funds: </strong>", 
                      selectedCountry()$Total.Funds,
                      "<br><strong>Client Cash: </strong>", 
                      selectedCountry()$Client.Cash,
                      "<br><strong>Total Client: </strong>", 
                      selectedCountry()$Total.Client)


leafletProxy("map", data = selectedCountry()) %>%
  clearShapes() %>%
  addPolygons(fillColor =  "blue",
              popup = state_popup,
              color = "#BDBDC3",
              fillOpacity = 0.5,
              weight = 1 
              )
})

# selected project
selectedProject <- reactive({
tmp4 <- projects.df[!is.na(projects.df$Project),]
tmp4[tmp4$Project == input$projectInput, ] 
})
observe({
state_popup4 <- paste0("<strong>Country: </strong>", 
                       selectedProject()$name, 
                      "<br><strong> Project: </strong>", 
                       selectedProject()$Project,
                      "<br><strong> Total Funds: </strong>", 
                       selectedProject()$Total.Funds,
                      "<br><strong>Client Cash: </strong>", 
                       selectedProject()$Client.Cash,
                      "<br><strong>Total Client: </strong>", 
                       selectedProject()$Total.Client)


 leafletProxy("map", data = selectedProject()) %>%
  clearShapes() %>%
  addPolygons(fillColor = "blue",
              popup = state_popup4,
              color = "#BDBDC3",
              fillOpacity = 0.5,
              weight = 1
              )
})

# Total Funds
selectedTotal <- reactive({
tmp <- projects.df[!is.na(projects.df$Project),]
tmp[tmp$Project == input$totalInput, ] 
})
observe({
state_popup1 <- paste0("<strong>Country: </strong>", 
                       selectedTotal()$name, 
                       "<br><strong> Project: </strong>", 
                       selectedTotal()$Project,
                       "<br><strong> Total Funds </strong>", 
                       selectedTotal()$Total.Funds)

leafletProxy("map", data = selectedTotal()) %>%
  clearShapes() %>%
   addCircles(lng = ~selectedTotal()$long, lat = ~selectedTotal()$lat, 
weight = 1, fillOpacity = 0.5, color = "darkorange", 
             radius = ~Total.Funds*500, popup = state_popup1

   )
})

# Cash Funds
selectedCash <- reactive({
tmp1 <- projects.df[!is.na(projects.df$Project),]
tmp1[tmp1$Project == input$cashInput, ] 
})
observe({
state_popup2 <- paste0("<strong>Country: </strong>", 
                       selectedCash()$name, 
                       "<br><strong>Project: </strong>", 
                       selectedCash()$Project,
                      "<br><strong>Client Cash: </strong>", 
                       selectedCash()$Client.Cash)

leafletProxy("map", data = selectedCash()) %>%
  clearShapes() %>%
  addCircles(lng = ~selectedCash()$long, lat = ~selectedCash()$lat, weight = 
1, fillOpacity = 0.5, color = "darkred", 
             radius = ~Client.Cash*500, popup = state_popup2)
})

# Total Client
selectedClient <- reactive({
tmp2 <- projects.df[!is.na(projects.df$Project),]
tmp2[tmp2$Project == input$clientInput, ] 
})
observe({
state_popup3 <- paste0("<strong>Country: </strong>", 
                       selectedClient()$name, 
                       "<br><strong>Project: </strong>", 
                       selectedClient()$Project,
                        "<br><strong>Total Client: </strong>", 
                       selectedClient()$Total.Client)

leafletProxy("map", data = selectedClient()) %>%
  clearShapes() %>%
  addCircles(lng = ~selectedClient()$long, lat = ~selectedClient()$lat, 
weight = 1, fillOpacity = 0.5, color = "darkgreen", 
             radius = ~Total.Client*500, popup = state_popup3)
})

# Indicator
selectedIndicator <- reactive({
tmp5 <- projects.df[!is.na(projects.df$Project),]
tmp5[tmp5$Total.Funds == input$indicatorInput | tmp5$Client.Cash == 
input$indicatorInput | tmp5$Total.Client == input$indicatorInput, ] 
})
observe({
state_popup5 <- paste0("<strong>Country: </strong>", 
                       selectedIndicator()$name, 
                       "<br><strong>Project: </strong>", 
                       selectedIndicator()$Project,
                       "<br><strong> Total Funds: </strong>", 
                       selectedIndicator()$Total.Funds,
                       "<br><strong>Client Cash: </strong>", 
                       selectedIndicator()$Client.Cash,
                       "<br><strong>Total Client: </strong>", 
                       selectedIndicator()$Total.Client
)

leafletProxy("map", data = selectedIndicator()) %>%
  clearShapes() %>%
  addCircles(lng = ~selectedIndicator()$long, lat = 
~selectedIndicator()$lat, weight = 1, fillOpacity = 0.5, color = 
"darkorange", 
             radius = ~Total.Client*500, popup = state_popup5)***


})

})

shinyApp(ui = ui, server = server)

Solution

  • Resolved with the help of R community.

    The last filter will work with this code.

    # Indicator
    selectedIndicator <- reactive({switch(input$indicatorInput, 
                                   "Total Funds " = projects.df$Total.Funds, 
                                   "Client Cash" = projects.df$Client.Cash, 
                                   "Total Client" = projects.df$Total.Client)
    })
    
    observe({
    state_popup5 <- paste0("<strong>Country: </strong>", 
                           projects.df$name, 
                           "<br><strong>Project: </strong>", 
                           projects.df$Project,
                           "<br><strong> Total Funds: </strong>", 
                           projects.df$Total.Funds,
                           "<br><strong>Client Cash: </strong>", 
                           projects.df$Client.Cash,
                           "<br><strong>Total Client: </strong>", 
                           projects.df$Total.Client
     )
    
     leafletProxy("map", data = projects.df) %>%
      clearShapes() %>%
      addCircles(lng = projects.df$long, lat = 
                   projects.df$lat, weight = 1, fillOpacity = 0.5, color = 
                   "darkorange", 
                 radius = ~selectedIndicator()*500, popup = state_popup5) 
     })
    

    Result:

    enter image description here