python-2.7numpycartesian

How to fit a 2D ellipse to given points


I would like to fit a 2D array by an elliptic function: (x / a)² + (y / b)² = 1 ----> (and so get the a and b)

And then, be able to replot it on my graph. I found many examples on internet, but no one with this simple Cartesian equation. I probably have searched badly ! I think a basic solution for this problem could help many people.

Here is an example of the data:

enter image description here

Sadly, I can not put the values... So let's assume that I have an X,Y arrays defining the coordinates of each of those points.


Solution

  • This can be solved directly using least squares. You can frame this as minimizing the sum of squares of quantity (alpha * x_i^2 + beta * y_i^2 - 1) where alpha is 1/a^2 and beta is 1/b^2. You have all the x_i's in X and the y_i's in Y so you can find the minimizer of ||Ax - b||^2 where A is an Nx2 matrix (i.e. [X^2, Y^2]), x is the column vector [alpha; beta] and b is column vector of all ones.

    The following code solves the more general problem for an ellipse of the form Ax^2 + Bxy + Cy^2 + Dx +Ey = 1 though the idea is exactly the same. The print statement gives 0.0776x^2 + 0.0315xy+0.125y^2+0.00457x+0.00314y = 1 and the image of the ellipse generated is also below

    import numpy as np
    import matplotlib.pyplot as plt
    alpha = 5
    beta = 3
    N = 500
    DIM = 2
    
    np.random.seed(2)
    
    # Generate random points on the unit circle by sampling uniform angles
    theta = np.random.uniform(0, 2*np.pi, (N,1))
    eps_noise = 0.2 * np.random.normal(size=[N,1])
    circle = np.hstack([np.cos(theta), np.sin(theta)])
    
    # Stretch and rotate circle to an ellipse with random linear tranformation
    B = np.random.randint(-3, 3, (DIM, DIM))
    noisy_ellipse = circle.dot(B) + eps_noise
    
    # Extract x coords and y coords of the ellipse as column vectors
    X = noisy_ellipse[:,0:1]
    Y = noisy_ellipse[:,1:]
    
    # Formulate and solve the least squares problem ||Ax - b ||^2
    A = np.hstack([X**2, X * Y, Y**2, X, Y])
    b = np.ones_like(X)
    x = np.linalg.lstsq(A, b)[0].squeeze()
    
    # Print the equation of the ellipse in standard form
    print('The ellipse is given by {0:.3}x^2 + {1:.3}xy+{2:.3}y^2+{3:.3}x+{4:.3}y = 1'.format(x[0], x[1],x[2],x[3],x[4]))
    
    # Plot the noisy data
    plt.scatter(X, Y, label='Data Points')
    
    # Plot the original ellipse from which the data was generated
    phi = np.linspace(0, 2*np.pi, 1000).reshape((1000,1))
    c = np.hstack([np.cos(phi), np.sin(phi)])
    ground_truth_ellipse = c.dot(B)
    plt.plot(ground_truth_ellipse[:,0], ground_truth_ellipse[:,1], 'k--', label='Generating Ellipse')
    
    # Plot the least squares ellipse
    x_coord = np.linspace(-5,5,300)
    y_coord = np.linspace(-5,5,300)
    X_coord, Y_coord = np.meshgrid(x_coord, y_coord)
    Z_coord = x[0] * X_coord ** 2 + x[1] * X_coord * Y_coord + x[2] * Y_coord**2 + x[3] * X_coord + x[4] * Y_coord
    plt.contour(X_coord, Y_coord, Z_coord, levels=[1], colors=('r'), linewidths=2)
    
    plt.legend()
    plt.xlabel('X')
    plt.ylabel('Y')
    plt.show()
    

    enter image description here