Basic question.
I have an input table like this:
1 2 3 4 5 6 7
1 0 0 1098 11 137 105 338
2 0 0 351 0 1 0 0
3 0 0 0 132 215 91 191
4 0 0 0 0 6 10 19
5 0 0 0 0 0 37 95
6 0 0 0 0 0 0 146
7 0 0 0 0 0 0 0
I wrote this code in R:
library(circlize)
table <-read.table('test_circos_real_data.txt')
table <- as.matrix(table, c("#FF000080", "#00FF0080", "#0000FF80","#FF000080", "#00FF0080", "#0000FF80"))
rownames(table) = c('car', 'bus','train', 'walk', 'run', 'skip', 'jump')
colnames(table) = c('car', 'bus','train', 'walk', 'run', 'skip', 'jump')
chordDiagram(table)
The output is
I know that the colours haven't been set properly, because when I run the code multiple times, the colours change, so I know it's random (even though I tried to set them in the code). At what point in the code, do I set the colours? I would like the colours: red, orange, green, blue, purple, pink etc to be set (trying to avoid dull colours like brown, black, grey).
Thanks.
Try the grid.col
argument:
chordDiagram(table, grid.col = c("red", "blue", "purple","pink", "orange", "green", "steelblue1"))