I am trying to submit a package to CRAN that fails during the pretest process on Debian.
I use some C++ code that interfaces to the nlopt optimization
library with Rcpp/RcppArmadillo (using <nlopt.hpp>). Thus, my package requires a system version of nlopt that can be installed via the deb package libnlopt-dev (I added this to the SystemRequirements field).
I use a configure script and pkg-config to retrieve the (hopefully) appropriate compiler flags which I then send to src/Makevars
NLOPT_LIBS=`pkg-config --libs ${PKG_CONFIG_NAME}`
NLOPT_FLAG=`pkg-config --cflags ${PKG_CONFIG_NAME}`
This approach works on my system (Ubuntu 18.04, R 3.5.2) and on Travis (linux and mac OS), but fails on the Debian CRAN server : https://win-builder.r-project.org/incoming_pretest/PLNmodels_0.7_20190119_161032/Debian/00install.out
I added some verbosity to check that the flags were correctly exported
on CRAN servers, and they seems alright to me: at least, a version of
nlopt is found on the system (see below, NLOPT_LIBS=-lnlopt -lm).
However, the <nlopt.hpp> is not found latter on...
Any help would be greatly appreciated. Thank for taking the time to read this.
* installing *source* package ‘PLNmodels’ ...
Using NLOPT_LIBS=-lnlopt -lm
Using NLOPT_FLAG=
** libs
g++-8 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -fopenmp
-I"/home/hornik/lib/R/Library/3.6/x86_64-linux-gnu/Rcpp/include"
-I"/home/hornik/lib/R/Library/3.6/x86_64-linux-gnu/RcppArmadillo/include"
-I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic
-mtune=native -c RcppExports.cpp -o RcppExports.o
g++-8 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -fopenmp
-I"/home/hornik/lib/R/Library/3.6/x86_64-linux-gnu/Rcpp/include"
-I"/home/hornik/lib/R/Library/3.6/x86_64-linux-gnu/RcppArmadillo/include"
-I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic
-mtune=native -c call_nlopt_PLN_VE.cpp -o call_nlopt_PLN_VE.o
In file included from call_nlopt_PLN_VE.cpp:6:
utils.h:5:10: fatal error: nlopt.hpp: No such file or directory
#include <nlopt.hpp>
^~~~~~~~~~~
compilation terminated.
make: *** [/home/hornik/tmp/R/etc/Makeconf:173: call_nlopt_PLN_VE.o] Error 1
ERROR: compilation failed for package ‘PLNmodels’
* removing ‘/srv/hornik/tmp/CRAN/PLNmodels.Rcheck/PLNmodels’
The C++ interface for nlopt has migrated to a separate package in Debian, c.f. https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=855600. So it looks like that particular CRAN machine uses either Debian Testing or Stable + Backports and has only libnlopt-dev but not libnlopt-cxx-dev installed. You will have to contact the CRAN maintainers to install this dependency.
BTW, ideally such errors should be cought in the configure script, i.e. you should try to compile a simple program that requires nlopt.hpp.