I have been experimenting with the RcppArrayFire Package, mostly rewriting some cost functions from RcppArmadillo and can't seem to get over "no viable conversion from 'af::array' to 'float'. I have also been getting some backend errors, the example below seems free of these.
This cov-var example is written poorly just to use all relevant coding pieces from my actual cost function. As of now it is the only addition in a package generated by, "RcppArrayFire.package.skeleton".
#include "RcppArrayFire.h"
#include <Rcpp.h>
// [[Rcpp::depends(RcppArrayFire)]]
// [[Rcpp::export]]
float example_ols(const RcppArrayFire::typed_array<f32>& X_vect, const RcppArrayFire::typed_array<f32>& Y_vect){
int Len = X_vect.dims()[0];
int Len_Y = Y_vect.dims()[0];
while( Len_Y < Len){
Len --;
}
float mean_X = af::sum(X_vect)/Len;
float mean_Y = af::sum(Y_vect)/Len;
RcppArrayFire::typed_array<f32> temp(Len);
RcppArrayFire::typed_array<f32> temp_x(Len);
for( int f = 0; f < Len; f++){
temp(f) = (X_vect(f) - mean_X)*(Y_vect(f) - mean_Y);
temp_x(f) = af::pow(X_vect(f) -mean_X, 2);
}
return af::sum(temp)/af::sum(temp_x);
}
/*** R
X <- 1:10
Y <- 2*X +rnorm(10, mean = 0, sd = 1)
example_ols(X, Y)
*/
The first thing to consider is the af::sum
function, which comes in different forms: An sf::sum(af::array)
that returns an af::array
in device memory and a templated af::sum<T>(af::array)
that returns a T
in host memory. So the minimal change to your example would be using af::sum<float>
:
#include "RcppArrayFire.h"
#include <Rcpp.h>
// [[Rcpp::depends(RcppArrayFire)]]
// [[Rcpp::export]]
float example_ols(const RcppArrayFire::typed_array<f32>& X_vect,
const RcppArrayFire::typed_array<f32>& Y_vect){
int Len = X_vect.dims()[0];
int Len_Y = Y_vect.dims()[0];
while( Len_Y < Len){
Len --;
}
float mean_X = af::sum<float>(X_vect)/Len;
float mean_Y = af::sum<float>(Y_vect)/Len;
RcppArrayFire::typed_array<f32> temp(Len);
RcppArrayFire::typed_array<f32> temp_x(Len);
for( int f = 0; f < Len; f++){
temp(f) = (X_vect(f) - mean_X)*(Y_vect(f) - mean_Y);
temp_x(f) = af::pow(X_vect(f) -mean_X, 2);
}
return af::sum<float>(temp)/af::sum<float>(temp_x);
}
/*** R
set.seed(1)
X <- 1:10
Y <- 2*X +rnorm(10, mean = 0, sd = 1)
example_ols(X, Y)
*/
However, there are more things one can improve. In no particular order:
Rcpp.h
.af::mean
function for computing the mean of an af::array
.RcppArrayFire::typed_array<T>
is only needed for getting arrays from R into C++. Within C++ and for the way back you can use af::array
.double
, you can still use double
values on the host.for
loops and use vectorized functions, just like in R. You have to impose equal dimensions for X
and Y
, though. Interestingly I get a different result when I use vectorized functions. Right now I am not sure why this is the case, but the following form makes more sense to me. You should verify that the result is what you want to get:
#include <RcppArrayFire.h>
// [[Rcpp::depends(RcppArrayFire)]]
// [[Rcpp::export]]
double example_ols(const RcppArrayFire::typed_array<f32>& X_vect,
const RcppArrayFire::typed_array<f32>& Y_vect){
double mean_X = af::mean<double>(X_vect);
double mean_Y = af::mean<double>(Y_vect);
af::array temp = (X_vect - mean_X) * (Y_vect - mean_Y);
af::array temp_x = af::pow(X_vect - mean_X, 2.0);
return af::sum<double>(temp)/af::sum<double>(temp_x);
}
/*** R
set.seed(1)
X <- 1:10
Y <- 2*X +rnorm(10, mean = 0, sd = 1)
example_ols(X, Y)
*/
BTW, an even shorter version would be:
#include <RcppArrayFire.h>
// [[Rcpp::depends(RcppArrayFire)]]
// [[Rcpp::export]]
af::array example_ols(const RcppArrayFire::typed_array<f32>& X_vect,
const RcppArrayFire::typed_array<f32>& Y_vect){
return af::cov(X_vect, Y_vect) / af::var(X_vect);
}
Generally it is a good idea to use the in-build functions as much as possible.