Exclude files from src/main/java and src/main/resources spring boot jar

I am trying to exclude some java files from src/main/java and also some yml files from src/main/resources folder while building the jar using spring boot maven plugin. I have tried the following options:

Option 1 in maven-jar-plugin

<configuration>
    <excludes>
        <exclude>**/security/**/*.java</exclude>
        <exclude>**/application-*.yml</exclude>
    </excludes>
</configuration>

Option 2 resources in build tag:

<resources>
    <resource>
        <directory>src/main</directory>
            <excludes>
                <exclude>**/security/*</exclude>
                <exclude>**/application-*.yml</exclude>
            </excludes>
            <filtering>false</filtering>
    </resource>
</resources>

Option 1 and both are removing the java files from the generated jar.
But option 2 changes structure in JAR it includes java and resource folder.

Any pointer for the above is greatly appreciated.

I found solution, as following; it is using the maven jar plugin exclusions. There were issues in maven wildcard which was provided earlier.

Edit: Not the right approach to include java files which are removed while buliding artifact as suggested by JF Meier and khmarbaise. But solution is still valid for files exclusion.

<plugin>
    <groupId>org.apache.maven.plugins</groupId>
    <artifactId>maven-jar-plugin</artifactId>
    <configuration>
        <excludes>
            <exclude>**/security/**</exclude>
            <exclude>**/application-*.yml</exclude>
        </excludes>
    </configuration>
</plugin>
<plugin>
    <groupId>org.springframework.boot</groupId>
    <artifactId>spring-boot-maven-plugin</artifactId>
    <executions>
        <execution>
            <id>repackage</id>
            <goals>
                <goal>repackage</goal>
            </goals>
        </execution>
    </executions>
</plugin>