I am deploying EAR into websphere 9.0.0.6 ISC everytime I make a change to java file. Its taking long time. Is there any setting I can do so that every time I make java change, can websphere deploy(Publish) the code automatically.
You can use the IBM WebSphere® Application Server Developer Tools for Eclipse plugin. See here to install into an existing Eclipse.
To fine-tune the publish settings read here.