According to the GDML manual I can include another file as follows
How can I create/add the &materials; to the element using python and lxml?
You should be able to use etree.Entity
...
from lxml import etree
docString = '<!DOCTYPE gdml [\n<!ENTITY materials SYSTEM "materials.xml">\n]>'
NS = "http://www.w3.org/2001/XMLSchema-instance"
location_attribute = f"{{{NS}}}noNameSpaceSchemaLocation"
gdml = etree.Element("gdml",
attrib={location_attribute:
"blahblahblah/gdml.xsd"})
ent_ref = etree.Entity("materials")
gdml.append(ent_ref)
print(etree.tostring(gdml, doctype=docString).decode())
prints...
<!DOCTYPE gdml [
<!ENTITY materials SYSTEM "materials.xml">
]>
<gdml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:noNameSpaceSchemaLocation="blahblahblah/gdml.xsd">&materials;</gdml>