I am trying to import the rpy2 library into a Jupyter Notebook but I cannot get past this error.
The PATH 'C:\Program Files\R\R-4.0.2\bin\x64' has been added.
This is the only version of R installed on my computer. I have completely uninstalled and reinstalled R/Rstudio/Anaconda with no luck.
Here is the full error:
---------------------------------------------------------------------------
OSError Traceback (most recent call last)
<ipython-input-7-098f0d39b3a3> in <module>
----> 1 from rpy2.robjects import pandas2ri
C:\Anaconda\lib\site-packages\rpy2\robjects\__init__.py in <module>
14 from functools import partial
15 import types
---> 16 import rpy2.rinterface as rinterface
17 import rpy2.rlike.container as rlc
18
C:\Anaconda\lib\site-packages\rpy2\rinterface.py in <module>
4 import typing
5 from typing import Union
----> 6 from rpy2.rinterface_lib import openrlib
7 import rpy2.rinterface_lib._rinterface_capi as _rinterface
8 import rpy2.rinterface_lib.embedded as embedded
C:\Anaconda\lib\site-packages\rpy2\rinterface_lib\openrlib.py in <module>
42 rlib = _rinterface_cffi.lib
43 else:
---> 44 rlib = _dlopen_rlib(R_HOME)
45
46
C:\Anaconda\lib\site-packages\rpy2\rinterface_lib\openrlib.py in _dlopen_rlib(r_home)
35 raise ValueError('The library path cannot be None.')
36 else:
---> 37 rlib = ffi.dlopen(lib_path)
38 return rlib
39
OSError: cannot load library 'C:\Program Files\R\R-4.0.2\bin\x64\R.dll': error 0x7e
edit:
Here is the code I run to import rpy2 library:
from rpy2.robjects import r, pandas2ri
For those not using Anaconda, add the following in Windows' environment variables PATH:
C:\Program Files\R\R-4.0.3\bin\x64
Your R version may differ from "R-4.0.3"
Otherwise, check Grayson Felt's reply:
Adding the PATH
C:\Users\username\Anaconda2;C:\Users\username\Anaconda2\Scripts;C:\Users\username\Anaconda2\Library\bin;C:\Users\username\Anaconda2\Library\mingw-w64\lib;C:\Users\username\Anaconda2\Library\mingw-w64\bin
and subsequently restarting Anaconda fixed the issue.
Alternatively, following Bruno's suggestion (and being more sohpisticated):
try:
import rpy2.robjects as robjects
except OSError as e:
try:
import os
import platform
if ('Windows', 'Microsoft') in platform.system():
os.environ["R_HOME"] = 'C:/Program Files/R/R-4.0.3/bin/x64' # Your R version here 'R-4.0.3'
os.environ["PATH"] = "C:/Program Files/R/R-4.0.3/bin/x64" + ";" + os.environ["PATH"]
import rpy2.robjects as robjects
except OSError:
raise(e)
This code won't be effective for non-Windows platform. Also adjustments may be necessary for different R versions. If it gets more complicated than this, you should probably just go for solutions 1 or 2.
NOTE: You may also face this issue if your Python and R versions are in different architechtures (x86 vs x64)