I'm going to use Python to read the GML file.
Traceback (most recent call last):
File "firstgml.py", line 9, in <module>
G = nx.read_gml(gml_path)
File "<decorator-gen-434>", line 2, in read_gml
File "/Users/XXXX/.pyenv/versions/3.8.5/lib/python3.8/site-packages/networkx/utils/decorators.py", line 227, in _open_file
result = func_to_be_decorated(*new_args, **kwargs)
File "/Users/XXXX/.pyenv/versions/3.8.5/lib/python3.8/site-packages/networkx/readwrite/gml.py", line 218, in read_gml
G = parse_gml_lines(filter_lines(path), label, destringizer)
File "/Users/XXXX/.pyenv/versions/3.8.5/lib/python3.8/site-packages/networkx/readwrite/gml.py", line 398, in parse_gml_lines
graph = parse_graph()
File "/Users/XXXX/.pyenv/versions/3.8.5/lib/python3.8/site-packages/networkx/readwrite/gml.py", line 387, in parse_graph
curr_token, dct = parse_kv(next(tokens))
File "/Users/XXXX/.pyenv/versions/3.8.5/lib/python3.8/site-packages/networkx/readwrite/gml.py", line 315, in tokenize
for line in lines:
File "/Users/XXXX/.pyenv/versions/3.8.5/lib/python3.8/site-packages/networkx/readwrite/gml.py", line 209, in filter_lines
line = line.decode('ascii')
AttributeError: 'int' object has no attribute 'decode'
import numpy as np
import networkx as nx
gml_path = "XXXX.gml"
gml_path = gml_path.encode("utf-8")
G = nx.read_gml(gml_path)
X = np.array(nx.to_numpy_matrix(G))
print(nx.is_directed(G))
I changed the encoding character code to ascii and so on, but I get an error.
Python 3.85
networkx 2.1
numpy 1.19.2
This is the part that is wrong.
gml_path = "XXXX.gml"
gml_path = gml_path.encode("utf-8")
G = nx.read_gml(gml_path)
You shouldn't be encoding the name of the file. read_gml
takes a filename or a filehandle. When you pass the encoded gml_path
it thinks it is an open file, so it goes to iterate over it. And when it goes to do line.decode('ascii')
, the line
variable contains b'X'
which transfers to the number 88.
gml_path = "XXXX.gml"
gml_path = gml_path.encode("utf-8")
print(gml_path[0])
>>> 88
The error you were getting before: "NetworkXError: input is not ASCII-encoded"
is because your file is not properly encoded, not your path to file. What you should do is remove this line gml_path = gml_path.encode("utf-8")
, and encode your GML file, either with another tool, or using Python.