I have a questions specific to the ipwtm function. I have a long numerator and denominator, and would like to assign strings to them. However, I have tried different methods like using get
, eval
, parse
and as.formula
but the function doesn't work. Please let me know if there's a way to solve this.
Example:
library("ipw")
data("haartdat")
haartdat[1:10,]
numerator <- as.formula("~ sex + age")
denominator <- as.formula("~ cd4.sqrt + sex + age")
temp <- ipwtm(exposure = haartind, family = "survival",
numerator = numerator, denominator = denominator,
id = patient, tstart = tstart, timevar = fuptime, type = "first",
data = haartdat)
As @jvargh7 mentioned in the comments, it is because of the match.call
+ deparse
, which returns the value as "numerator", "denominator". An option is to add two lines in the source code after the match.call()
and call it as a new function.
ipwtm2 <- function (exposure, family, link, numerator = NULL, denominator,
id, tstart, timevar, type, data, corstr = "ar1", trunc = NULL,
...) {
tempcall <- match.call()
tempcall$numerator <- numerator # new
tempcall$denominator <- denominator # new
...
...
}
-testing
library(survival)
library(ipw)
data(haartdat)
numerator <- as.formula("~ sex + age")
denominator <- as.formula("~ sex + age + cd4.sqrt")
temp <- ipwtm2(exposure = haartind, family = "survival",
numerator = numerator, denominator = denominator,
id = patient, tstart = tstart, timevar = fuptime, type = "first",
data = haartdat)
temp_old <- ipwtm(exposure = haartind, family = "survival",
numerator = ~ sex + age, denominator = ~ sex + age + cd4.sqrt,
id = patient, tstart = tstart, timevar = fuptime, type = "first",
data = haartdat)
-check the output
temp$num.mod
Call:
coxph(formula = Surv(tstart, fuptime, haartind) ~ sex + age,
data = haartdat, subset = tempdat$selvar == 1, na.action = na.fail,
method = "efron")
coef exp(coef) se(coef) z p
sex 0.069424 1.071891 0.124365 0.558 0.577
age 0.007521 1.007549 0.005123 1.468 0.142
Likelihood ratio test=2.22 on 2 df, p=0.3287
n= 14389, number of events= 376
temp_old$num.mod
Call:
coxph(formula = Surv(tstart, fuptime, haartind) ~ sex + age,
data = haartdat, subset = tempdat$selvar == 1, na.action = na.fail,
method = "efron")
coef exp(coef) se(coef) z p
sex 0.069424 1.071891 0.124365 0.558 0.577
age 0.007521 1.007549 0.005123 1.468 0.142
Likelihood ratio test=2.22 on 2 df, p=0.3287
n= 14389, number of events= 376