I'm trying to filter a network by some edge attribute keeping the nodes connected by edges that pass my filter.
So, in the Filter tab I select the column from Edge table and values range (I can keep the whole range with the same result). The message says "Selected 0 nodes and N edges". If I choose select
I do see those edges, but if I select show
the network is blank.
If I add a filter that all nodes pass together with the edge filter and choose Match all (AND)
, I get "Selected 0 nodes and 0 edges". Nothing even get selected. If I choose Match any (OR)
and show
I can see the whole network with both selected and not-selected edges.
Is it a bug in Cytoscape, or am I doing something wrong?
Cytoscape for Windows v 3.8.0.
I found that I can achieve what I want selecting the edges with filter, then creating a new network - in the top menu "New Network From Selection" button, "From Selected Nodes, Selected Edges". It keeps only edges that pass the filter and the connected nodes.