This is my goodness of fit test:
(fm <- distsamp(~1 ~ndvi_avg, keyfun="hazard", umf))
# Function returning three fit-statistics.
fitstats <- function(fm) {
observed <- getY(fm@data)
expected <- fitted(fm)
resids <- residuals(fm)
sse <- sum(resids^2)
chisq <- sum((observed - expected)^2 / expected)
freeTuke <- sum((sqrt(observed) - sqrt(expected))^2)
out <- c(SSE=sse, Chisq=chisq, freemanTukey=freeTuke)
return(out)
}
(pb <- parboot(fm, fitstats, nsim=100, report=1))
I can do up to nsim=99, and then I try nsim=100 which results in the following:
> (pb <- parboot(fm, fitstats, nsim=100, report=1))
t0 = 103.385 540.1714 70.38591
Running in parallel on 3 cores. Bootstrapped statistics not reported.
I wonder if this is a bug in the unmarked package?
Try parallel = FALSE
inside parboot()
.
Documentation: https://www.rdocumentation.org/packages/unmarked/versions/1.1.0/topics/parboot