I was working with Spyder IDE with python version 3.8.5 and I was using pymc3 (can't remember the exact version) and it was working fine and after upgrading scipy, spyder and python, everything went haywire. I spent the last 2 days trying to sort out this problem and everytime I install pymc3 and run the program either I get error with regards to theano and cxx__flag, or arviz with no attribute for geweke or then it gets an error with regards to 'plots'.
Can someone tell me what is stable verions to use for pymc3, arviz, theano and theano-pymc?
Edit 1:
Well, I managed to get it to work using by upgrading python to 3.8.10 in spyder IDE and then I uninstalled and reinstalled pymc3 theano and arviz using the following line in anaconda terminal.
conda install -c conda-forge pymc3
But, now I get this error when it runs my code:
sd_0 = pm.Normal('sd_0', mu=0, sd=1)
File "D:\Anaconda\lib\site-packages\pymc3\distributions\distribution.py", line 121, in __new__
dist = cls.dist(*args, **kwargs)
File "D:\Anaconda\lib\site-packages\pymc3\distributions\distribution.py", line 130, in dist
dist.__init__(*args, **kwargs)
File "D:\Anaconda\lib\site-packages\pymc3\distributions\continuous.py", line 488, in __init__
self.variance = 1.0 / self.tau
File "D:\Anaconda\lib\site-packages\theano\tensor\var.py", line 176, in __rtruediv__
return theano.tensor.basic.true_div(other, self)
File "D:\Anaconda\lib\site-packages\theano\graph\op.py", line 253, in __call__
compute_test_value(node)
File "D:\Anaconda\lib\site-packages\theano\graph\op.py", line 126, in compute_test_value
thunk = node.op.make_thunk(node, storage_map, compute_map, no_recycling=[])
File "D:\Anaconda\lib\site-packages\theano\graph\op.py", line 634, in make_thunk
return self.make_c_thunk(node, storage_map, compute_map, no_recycling)
File "D:\Anaconda\lib\site-packages\theano\graph\op.py", line 600, in make_c_thunk
outputs = cl.make_thunk(
File "D:\Anaconda\lib\site-packages\theano\link\c\basic.py", line 1203, in make_thunk
cthunk, module, in_storage, out_storage, error_storage = self.__compile__(
File "D:\Anaconda\lib\site-packages\theano\link\c\basic.py", line 1138, in __compile__
thunk, module = self.cthunk_factory(
File "D:\Anaconda\lib\site-packages\theano\link\c\basic.py", line 1634, in cthunk_factory
module = get_module_cache().module_from_key(key=key, lnk=self)
File "D:\Anaconda\lib\site-packages\theano\link\c\cmodule.py", line 1191, in module_from_key
module = lnk.compile_cmodule(location)
File "D:\Anaconda\lib\site-packages\theano\link\c\basic.py", line 1543, in compile_cmodule
module = c_compiler.compile_str(
File "D:\Anaconda\lib\site-packages\theano\link\c\cmodule.py", line 2546, in compile_str
raise Exception(
Exception: ("Compilation failed (return status=1): C:\\Users\\----\\AppData\\Local\\Temp\\ccZOquFy.o: In function `run':\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:99: undefined reference to `__imp__Py_NoneStruct'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:124: undefined reference to `__imp_PyExc_ValueError'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:130: undefined reference to `__imp_PyExc_RuntimeError'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:158: undefined reference to `__imp_PyExc_NotImplementedError'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:195: undefined reference to `__imp__Py_NoneStruct'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:210: undefined reference to `__imp_PyExc_ValueError'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:479: undefined reference to `__imp_PyExc_NotImplementedError'\r. C:\\Users\\----\\AppData\\Local\\Temp\\ccZOquFy.o: In function `_Py_INCREF':\r. D:/Anaconda/include/object.h:459: undefined reference to `__imp__Py_NoneStruct'\r. C:\\Users\\----\\AppData\\Local\\Temp\\ccZOquFy.o: In function `run':\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:485: undefined reference to `__imp_PyExc_RuntimeError'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:244: undefined reference to `__imp_PyExc_NotImplementedError'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:265: undefined reference to `__imp_PyExc_RuntimeError'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:173: undefined reference to `__imp_PyExc_TypeError'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:179: undefined reference to `__imp_PyExc_RuntimeError'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:515: undefined reference to `__imp__Py_NoneStruct'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:514: undefined reference to `__imp__Py_NoneStruct'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:516: undefined reference to `__imp__Py_NoneStruct'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:259: undefined reference to `__imp_PyExc_TypeError'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:279: undefined reference to `__imp__Py_NoneStruct'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:294: undefined reference to `__imp_PyExc_ValueError'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:328: undefined reference to `__imp_PyExc_NotImplementedError'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:349: undefined reference to `__imp_PyExc_RuntimeError'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:216: undefined reference to `__imp_PyExc_RuntimeError'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:343: undefined reference to `__imp_PyExc_TypeError'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:300: undefined reference to `__imp_PyExc_RuntimeError'\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:397: undefined reference to `__imp_PyExc_RuntimeError'\r. C:\\Users\\----\\AppData\\Local\\Temp\\ccZOquFy.o: In function `instantiate':\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:550: undefined reference to `__imp_PyExc_TypeError'\r. C:\\Users\\----\\AppData\\Local\\Temp\\ccZOquFy.o: In function `_import_array':\r. D:/Anaconda/lib/site-packages/numpy/core/include/numpy/__multiarray_api.h:1480: undefined reference to `__imp_PyCapsule_Type'\r. D:/Anaconda/lib/site-packages/numpy/core/include/numpy/__multiarray_api.h:1481: undefined reference to `__imp_PyExc_RuntimeError'\r. C:\\Users\\----\\AppData\\Local\\Temp\\ccZOquFy.o: In function `PyInit_m31975b6dadb59d49af3f2b36405378825884299512ee0ed9081be33fa591d30d':\r. C:/Users/----/AppData/Local/Theano/compiledir_Windows-10-10.0.19042-SP0-Intel64_Family_6_Model_78_Stepping_3_GenuineIntel-3.8.10-64/tmpalwsztr6/mod.cpp:583: undefined reference to `__imp_PyExc_ImportError'\r. C:\\Users\\----\\AppData\\Local\\Temp\\ccZOquFy.o: In function `_import_array':\r. D:/Anaconda/lib/site-packages/numpy/core/include/numpy/__multiarray_api.h:1512: undefined reference to `__imp_PyExc_RuntimeError'\r. D:/Anaconda/lib/site-packages/numpy/core/include/numpy/__multiarray_api.h:1496: undefined reference to `__imp_PyExc_RuntimeError'\r. D:/Anaconda/lib/site-packages/numpy/core/include/numpy/__multiarray_api.h:1502: undefined reference to `__imp_PyExc_RuntimeError'\r. D:/Anaconda/lib/site-packages/numpy/core/include/numpy/__multiarray_api.h:1524: undefined reference to `__imp_PyExc_RuntimeError'\r. D:/Anaconda/lib/site-packages/numpy/core/include/numpy/__multiarray_api.h:1476: undefined reference to `__imp_PyExc_AttributeError'\r. D:/Anaconda/lib/site-packages/numpy/core/include/numpy/__multiarray_api.h:1488: undefined reference to `__imp_PyExc_RuntimeError'\r. collect2.exe: error: ld returned 1 exit status\r. ", 'FunctionGraph(Elemwise{true_div,no_inplace}(TensorConstant{1.0}, TensorConstant{1.0}))')
Well, What I did is the following lines and managed to fix my problem:
conda install -c conda-forge pymc3 while keeping the same version of numpy, scipy and theano (Because the moment I updated numpy and scipy, it tends to cause inconsistencies with the files for Pymc3)conda install -c conda-forge theano-pymc