I have already tried multitude of options but I can't get it working and do not have a clue why. Input dataframe is calculated the same way that Max Kuhn specifies in the caret R documentation. My dataset si formed by 362 predictors and a column of factors with 2 levels. I execute the following code:
set.seed(150)
ctrl_rf <- rfeControl(functions = 'rfFuncs',
method = "cv",
number = 10,
rerank = T #Number of folds
)
y <- fTR[,'defective']
x <- fTR[,1:362]
normalization <- preProcess(x)
x <- predict(normalization, x)
x <- as.data.frame(x)
rferf <- rfe( x,
y,
#sizes = c(10,50,100,200,362),
metric = "Kappa",
#maximize=TRUE,
rfeControl = ctrl_rf)
However, when executing the code, I keep getting the
Error: $ operator is invalid for atomic vectors'
What am I doing wrong?
Rerun your code after replacing functions = 'rfFuncs'
by functions = rfFuncs
i.e. remove ''
from the function name.