[SOLVED] compiling with MKL, OpenBLAS, and other libraries by using Makefile

compiling with MKL, OpenBLAS, and other libraries by using Makefile

I have tried to compile one probabilistic model posted on github (https://github.com/gerowam/influence), but for the person who is not familiar with C language and compiling, it is really hard to know how to install relevant libraries and do compiling with "Makefile" on ubuntu 20.04.

The below is what I did for install required libraries according to short introduction to compile process on github webpage:

sudo apt-get update
sudo apt-get install git
sudo apt-get install make
sudo apt-get install gcc
sudo apt-get install g++
sudo apt-get install libmkl-dev
sudo apt-get install libopenblas-dev
sudo apt-get install libhdf5-dev
sudo apt-get install liblapack-dev

sudo git clone http://www.github.com/gerowam/influence

And when I run "make," I've got the following:

swhan@swhan-VirtualBox:~/influence/dtm-dim-rdim/rdim$ make
g++ -w -Wunsafe-loop-optimizations -DSPARSE -DMKL -O3 -DMKL_ILP64 -DNDEBUG -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -I ../lib/include -I ../lib -I ../lib/math -I ../gslwrap/include -I ../gslwrap/include/gslwrap -I ../local/include -I ../lib/util/gflags-1.1/src/gflags -I/include -I /include -I /include -m64 -fopenmp -frounding-math -msse4.2 -mfpmath=sse -march=native -fno-trapping-math -fno-signaling-nans -fno-signed-zeros -fgcse-after-reload -funsafe-loop-optimizations -fgcse-sm -fgcse-las -fipa-pta -funswitch-loops    -c -o ss-lm.o ss-lm.c
In file included from ss-lm.h:29,
                 from ss-lm.c:15:
data.h:41:10: fatal error: mkl_lapacke.h: No such file or directory
   41 | #include "mkl_lapacke.h"
      |          ^~~~~~~~~~~~~~~
compilation terminated.
make: *** [<builtin>: ss-lm.o] Error 1

So I looked at Makefile, and it looks like this:

CFLAGS = -DSPARSE -DMKL -O3 -DMKL_ILP64 \
        -DNDEBUG -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF  \
        -I ${SPARSE_GSL_INC} -I ${LIB} -I ${LIB}/math -I ${GSLWRAP_LIB}/include \
        -I ${GSLWRAP_LIB}/include/gslwrap -I ${LOCAL_DIR}/include \
        -I ${LIB}/util/gflags-1.1/src/gflags -I${LOCAL}/include \
        -I ${OPENBLAS_ROOT}/include \
        -I ${MKLROOT}/include \
        -m64 -fopenmp -frounding-math -msse4.2 -mfpmath=sse -march=native \
        -fno-trapping-math -fno-signaling-nans -fno-signed-zeros \
        -fgcse-after-reload -funsafe-loop-optimizations \
        -fgcse-sm -fgcse-las -fipa-pta -funswitch-loops
        #-I ../opt-local/openblas/include \
        #-fprofile-use -fprofile-correction
        #-fprofile-correction -fprofile-generate -fprofile-arcs -fprofile-values

But in Makefile, there do not exist macros for "MKLROOT" and "OPENBLAS_ROOT," but when I tried to set the macros for both, there is a problem. To be specific, it seems that MKL library is installed in the path of /usr/include/mkl but

-I ${MKLROOT}/include

the above made me confused about how to set the macros for MKL. In addition, if I set the following:

MKLROOT=/usr
...
-I ${MKLROOT}/include/mkl

another problem pops up. That is,

LDFLAGS = -Wl,-Map=ld_linkmap,-cref,-rpath -Wl,${LIB}/lib -L${LIB}/lib \
        -L${LOCAL_DIR}/lib -L${LOCAL_DIR}/lib/stl \
        -L../opt-local/openblas/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial \
        -lhdf5 -lhdf5_hl -lgsl -lopenblas -lm \
        -Wl,--no-as-needed -L${MKLROOT}/lib/intel64 -lmkl_intel_ilp64 -lmkl_core -lmkl_gnu_thread -lgomp -ldl -lpthread

In this case, something related to "intel64" seems to be located at /usr/include/mkl/intel64 but then I have no idea how to proceed the above command. The following is the error message that I have got:

/usr/bin/ld: main.o: in function `main':
main.c:(.text.startup+0x156): undefined reference to `MKL_Set_Interface_Layer'
/usr/bin/ld: main.c:(.text.startup+0x15d): undefined reference to `MKL_Set_Threading_Layer'
collect2: error: ld returned 1 exit status
make: *** [Makefile:55: main] Error 1

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