Hopefully, this example illustrates what I'm trying to do.
I run a comparison of the same simple example toggling verbose TRUE
and FALSE
.
library("INLA")
test <- capture.output(
{
inla(speed ~ dist, data = datasets::cars, verbose = F)
}
)
I try and capture the verbose output. It appears in my console but is not captured. test
and test2
appear identical.
library("INLA")
test2 <- capture.output(
{
inla(speed ~ dist, data = datasets::cars, verbose = T)
}
)
Some system info
sysname
"Linux"
release
"4.19.0-16-cloud-amd64"
version
"#1 SMP Debian 4.19.181-1 (2021-03-19)"
Some R version info
platform x86_64-pc-linux-gnu
arch x86_64
os linux-gnu
system x86_64, linux-gnu
status
major 3
minor 6.3
year 2020
month 02
day 29
svn rev 77875
language R
version.string R version 3.6.3 (2020-02-29)
nickname Holding the Windsock
I've had the answer to this from help@r-inla.org. If you set verbose = F, default, then the log is stored in a file.
> r=inla(y~1,data=data.frame(y=0))
> head(r$logfile)
[1] " Read ntt 4 1 with max.threads 8"
[2] " Found num.threads = 4:1 max_threads = 4"
[3] " file: src/inla.c 4f8384f383a924449b14072dec7e4f9ce74ca121
- Wed Feb 16 14:16:16 2022 +0300"
[4] "Report bugs to <help@r-inla.org>"
[5] "Set reordering to id=[0] and name=[default]"
[6] "Process file[/tmp/Rtmpv5S9QO/file1c6414e8a909a/Model.ini]
threads[4] max.threads[8] blas_threads[1] nested[4:1]"
Got to say since the logfile element isn't mentioned in the inla class documentation or in the verbose parameter to the function. I don't feel too bad about not spotting this.