I want to setup this app called Http Toolkit and for some reason I have the warning "System Trust Disabled". My android device is not rooted.
This is due to limitations in recent versions of Android. On unrooted devices, it is impossible to install system certificates.
You can still intercept HTTPS traffic using just user certificates, but you will only be able to intercept apps that opt into this by explicitly trusting user certificates. Most apps don't do this, so this is useful for debugging your own apps, but not for reverse engineering other people's.
You have a few options:
There's a lot more info in the HTTP Toolkit docs here: https://httptoolkit.com/docs/guides/android/