rcrcpprcpp11

Rf_allocVector only allocates and does not zero out memory


Original motivation behind this is that I have a dynamically sized array of floats that I want to pass to R through Rcpp without either incurring the cost of a zeroing out nor the cost of a deep copy.

Originally I had thought that there might be some way to take heap allocated array, make it aware to R's gc system and then wrap it with other data to create a "Rcpp::NumericVector" but it seems like that that's not possible - or doable with my current knowledge.

However and correct me if I'm wrong it looks like simply constructing a NumericVector with a size N and then using it as an N sized allocation will call R.h's Rf_allocVector and that itself does not either zero out the allocated array - I tested it on a small C program that gets dyn.loaded into R and it looks like garbage values. I also took a peek at the assembly and there doesn't seem to be any zeroing out.

Can anyone confirm this or offer any alternate solution?


Solution

  • You marked this rcpp but that is a function from the C API of R -- whereas the Rcpp API offers you its constructors which do in fact set the memory tp zero:

    > Rcpp::cppFunction("NumericVector goodVec(int n) { return NumericVector(n); }")
    > sum(goodVec(1e7))
    [1] 0
    > 
    

    This creates a dynamically allocated vector using R's memory functions. The vector is indistinguishable from R's own. And it has the memory set to zero as we use R_Calloc, which is documented in Writing R Extension to setting the memory to zero. (We may also use memcpy() explicitly, you can check the sources.)

    So in short, you just have yourself confused over what the C API of R, as well as Rcpp offer, and what is easiest to use when. Keep reading documentation, running and writing examples, and studying existing code. It's all out there!