I am trying to run the following model:
Mm3znb<-glmmTMB(total~ Geopolitical-1 + offset(logha) + YearCollected + tmn + (tmn|Site/Plot), ziformula = ~1, data = mc3m, family="nbinom2")
but when I try to obtain the confidence intervals am getting this error:
Error in dimnames(x) <- dn :
length of 'dimnames' [2] not equal to array extent
Does anyone know what this issue might be?
This is a problem that has been fixed very recently (June 2022) in the development version (confint
wasn't working in models with more than one random effect; (tmn|Site/Plot)
is implicitly two random effects, as it gets expanded to (tmn|Site) + (tmn|Site:Plot)
internally).
If you can (you will need to install development tools - e.g. Xcode if you're on MacOS, Rtools if you're on Windows), install the development version via
remotes::install_github("glmmTMB/glmmTMB/glmmTMB")
The pkgdown page has a little more information about installing (if all else fails, contact the developers to see if they can make a recent binary package available).