I am using Shapely, geopandas and pygeos and get the following warning:
UserWarning: The Shapely GEOS version (3.10.2-CAPI-1.16.0) is incompatible with the GEOS version PyGEOS was compiled with (3.10.1-CAPI-1.16.0). Conversions between both will be slow.
The respective versions are:
Shapely 1.8.2
geopandas 0.10.2
pygeos 0.12.0
Question:
Can I solve this issue by upgrading / downgrading one of the versions? I was not able to find a list of compatible versions.
The following solution (originally posted here) worked for me:
pip install --force-reinstall --no-binary shapely shapely
If encounter OSError: /home/users/xxx/miniconda3/envs/nuplan/lib/libgeos_c.so: cannot open shared object file: No such file or directory, then do
conda install -c conda-forge pygeos
to fix the missing library problem eventually you have to do (not necessary in my case)
export LD_LIBRARY_PATH=$LD_LIBARRY_PATH:$HOME/miniconda3/env/nuplan/lib