I'm trying to install the package mnormt, and I get the error below:
I can't figure out the problem.
install.packages("mnormt")
There is a binary version available but the source version is later:
binary source needs_compilation
mnormt 2.1.0 2.1.1 TRUE
Do you want to install from sources the package which needs compilation? (Yes/no/cancel) Yes
installing the source package ‘mnormt’
trying URL 'https://cran.rstudio.com/src/contrib/mnormt_2.1.1.tar.gz'
Content type 'application/x-gzip' length 65806 bytes (64 KB)
==================================================
downloaded 64 KB
* installing *source* package ‘mnormt’ ...
** package ‘mnormt’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c biv-nt.f -o biv-nt.o
biv-nt.f:371:11:
371 | hs = sign( one, dh - r*dk )
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
biv-nt.f:372:11:
372 | ks = sign( one, dk - r*dh )
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c mnormt_init.c -o mnormt_init.o
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c rtmng.f -o rtmng.o
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c sadmvnt.f -o sadmvnt.o
sadmvnt.f:977:3:
977 | 10 END DO
| 1
Warning: Label 10 at (1) defined but not used [-Wunused-label]
sadmvnt.f:81:15:
81 | INFORM = MVNNIT( N, CORREL, LOWER, UPPER, INFIN, INFIS, D, E )
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
sadmvnt.f:218:38:
218 | IF ( MINCLS .LT. 0 ) SBRGNS = WORK(LENWRK)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
sadmvnt.f:276:21:
276 | RGNCLS = RGNCLS*(MESH(DIVAXN)+1)/MESH(DIVAXN)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
sadmvnt.f:277:21:
277 | NWRGNS = NWRGNS*(MESH(DIVAXN)+1)/MESH(DIVAXN)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
sadmvnt.f:1275:24:
1275 | POINTS = PONTRS(SUBTMP)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
sadmvnt.f:1276:24:
1276 | POINTP = PONTRS(SUBTMP+1)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
sadmvnt.f:1284:21:
1284 | POINTS = PONTRS(SUBTMP)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
sadmvnt.f:1304:21:
1304 | POINTS = PONTRS(SUBTMP)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
sadmvnt.f:325:15:
325 | TOP = PONTRS(1)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
sadmvnt.f:332:21:
332 | RGNCLS = RGNCLS*MESH(I)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
sadmvnt.f:337:18:
337 | RGNCLS = RGNCLS*(MESH(DIVAXN)+1)/MESH(DIVAXN)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
sadmvnt.f:1586:3:
1586 | 10 END DO
| 1
Warning: Label 10 at (1) defined but not used [-Wunused-label]
sadmvnt.f:1433:15:
1433 | INFORM = MVTNIT( N, NU, CORREL, LOWER, UPPER, INFIN, INFIS, D, E )
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
sadmvnt.f:1128:31:
1128 | INTEGER S, IXCHNG, LXCHNG, I, L
| ^
Warning: 'lxchng' may be used uninitialized [-Wmaybe-uninitialized]
sadmvnt.f:805:72:
805 | END
| ^
Warning: '__result_bvn' may be used uninitialized [-Wmaybe-uninitialized]
sadmvnt.f:763:35:
763 | DOUBLE PRECISION FUNCTION BVN ( LOWER, UPPER, INFIN, CORREL )
| ^
note: '__result_bvn' was declared here
sadmvnt.f:1042:72:
1042 | IF ( INFI(I) .NE. 1 ) YU = -EXP( -BMIN**2/2 )/SQTWPI
| ^
Warning: 'bmin' may be used uninitialized [-Wmaybe-uninitialized]
sadmvnt.f:939:41:
939 | DOUBLE PRECISION CVDIAG, AMIN, BMIN, DMIN, EMIN, YL, YU
| ^
note: 'bmin' was declared here
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c tvpack.f -o tvpack.o
tvpack.f:459:14:
459 | HS = SIGN( ONE, DH - R*DK )
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
tvpack.f:460:14:
460 | KS = SIGN( ONE, DK - R*DH )
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
tvpack.f:126:52:
126 | DOUBLE PRECISION ONE, ZRO, EPS, ZROS(3), HS(3), TVT
| 1
Warning: Unused variable 'hs' declared at (1) [-Wunused-variable]
tvpack.f:126:45:
126 | DOUBLE PRECISION ONE, ZRO, EPS, ZROS(3), HS(3), TVT
| 1
Warning: Unused variable 'zros' declared at (1) [-Wunused-variable]
tvpack.f:286:72:
286 | END
| ^
Warning: 'fin' may be used uninitialized [-Wmaybe-uninitialized]
tvpack.f:262:58:
262 | DOUBLE PRECISION EI(NL), AI(NL), BI(NL), FI(NL), FIN, ERR, KRNRDT
| ^
note: 'fin' was declared here
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mnormt.so biv-nt.o mnormt_init.o rtmng.o sadmvnt.o tvpack.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
ld: warning: ignoring file biv-nt.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64
ld: warning: ignoring file tvpack.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64
ld: warning: ignoring file /usr/local/gfortran/lib/libquadmath.dylib, building for macOS-x86_64 but attempting to link with file built for macOS-arm64
ld: warning: ignoring file /usr/local/gfortran/lib/libgfortran.dylib, building for macOS-x86_64 but attempting to link with file built for macOS-arm64
ld: warning: ignoring file rtmng.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64
ld: warning: ignoring file sadmvnt.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64
installing to /Library/Frameworks/R.framework/Versions/4.2/Resources/library/00LOCK-mnormt/00new/mnormt/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘mnormt’:
.onLoad failed in loadNamespace() for 'mnormt', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/4.2/Resources/library/00LOCK-mnormt/00new/mnormt/libs/mnormt.so':
dlopen(/Library/Frameworks/R.framework/Versions/4.2/Resources/library/00LOCK-mnormt/00new/mnormt/libs/mnormt.so, 0x0006): symbol not found in flat namespace (_rtmng_)
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/mnormt’
Warning in install.packages :
installation of package ‘mnormt’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/hk/q08x2zts3vs0cs7rvt111_4r0000gn/T/RtmpIh1wlH/downloaded_packages’
platform x86_64-apple-darwin17.0
arch x86_64
os darwin17.0
system x86_64, darwin17.0
status
major 4
minor 2.1
year 2022
month 06
day 23
svn rev 82513
language R
version.string R version 4.2.1 (2022-06-23)
nickname Funny-Looking Kid
Macbook Air M2
Following @Ben Bolker comment,
The problem was solved by selecting no for the question
There is a binary version available but the source version is later:
binary source needs_compilation
mnormt 2.1.0 2.1.1 TRUE
Do you want to install from sources the package which needs compilation? (Yes/no/cancel)
I'm still unsure why that happened. But problem fixed!