I generated several figures using different kinds of commands such as tikz, rmarkdown chunck, ggplot2 like the following. Unfortunately, they all are generated with the same figure number as "Figure 1". Do you have any suggestion to resolve the issue? Here in the following I generate a reproducible example. Please refer to the following codes for your reference.
---
title: "demo"
author:
output:
pdf_document:
number_sections: true
in_header: preamble.tex
keep_tex: yes
fontsize: 12pt
linestretch: 1.2
subparagraph: true
number_sections: true
geometry: margin=1in
header-includes:
- \usepackage{amsmath}
- \usepackage{amsthm}
- \usepackage{bbm}
- \numberwithin{equation}{section}
- \usepackage{makecell}
- \usepackage{indentfirst}
- \usepackage{geometry}
- \usepackage{graphicx}
- \usepackage{tikz}
- \AtEndPreamble{\usepackage{cleveref}}
---
```{r fig.align="center", fig.cap="\\label{fig:figure4}Trends", warning=FALSE, echo=FALSE, message=FALSE}
library(ggplot2)
options(scipen=999) # turn-off scientific notation like 1e+48
library(ggplot2)
theme_set(theme_bw()) # pre-set the bw theme.
data("midwest", package = "ggplot2")
gg <- ggplot(midwest, aes(x=area, y=poptotal)) +
geom_point(aes(col=state, size=popdensity)) +
geom_smooth(method="loess", se=F) +
xlim(c(0, 0.1)) +
ylim(c(0, 500000)) +
labs(subtitle="Area Vs Population",
y="Population",
x="Area",
title="Scatterplot",
caption = "Source: midwest")
plot(gg)
```
```{r fig.align="center", fig.cap="\\label{fig:figure1} figure 1 "}
library(datasets)
library(tseries)
data("AirPassengers")
passengers <- AirPassengers
plot(passengers, main = "Monthly Air Passenger Traffic")
```
\begin{figure}
\tikzset{every picture/.style={line width=0.75pt}} %set default line width to 0.75pt
\begin{tikzpicture}[x=0.75pt,y=0.75pt,yscale=-1,xscale=1]
\draw [fill={rgb, 255:red, 0; green, 0; blue, 0 } ,fill opacity=0.32 ] (66.5,28.97) -- (248.5,28.97) -- (248.5,137) -- (66.5,137) -- cycle ;
\draw [fill={rgb, 255:red, 0; green, 0; blue, 0 } ,fill opacity=0.25 ] (62.5,265.61) -- (250.25,265.61) -- (250.25,356.79) -- (62.5,356.79) -- cycle ;
\end{tikzpicture}
\caption{\footnotesize Flow Diagram 1}
\label{fig:figure2}
\end{figure}
\begin{figure}
\tikzset{every picture/.style={line width=0.75pt}}
\begin{tikzpicture}[x=0.75pt,y=0.75pt,yscale=-1,xscale=1]
\draw [fill={rgb, 255:red, 0; green, 0; blue, 0 } ,fill opacity=0.32 ] (66.5,28.97) -- (248.5,28.97) -- (248.5,137) -- (66.5,137) -- cycle ;
\draw [fill={rgb, 255:red, 0; green, 0; blue, 0 } ,fill opacity=0.25 ] (62.5,265.61) -- (250.25,265.61) -- (250.25,356.79) -- (62.5,356.79) -- cycle ;
\end{tikzpicture}
\caption{\footnotesize Flow Diagram2}
\label{fig:figure3}
\end{figure}
```
Look at \cref{fig:figure1}, \cref{fig:figure2}, \cref{fig:figure3} and \cref{fig:figure4}.
you are missing the cleveref
package
there is a typo in fig:figuare1
and according to Error trying to install package for iris dataset , there is no iris
library
---
title: "demo"
author:
output:
pdf_document:
number_sections: true
link-citations: yes
toc: false
biblio-style: apalike
in_header: preamble.tex
keep_tex: yes
fontsize: 12pt
linestretch: 1.2
subparagraph: true
number_sections: true
geometry: margin=1in
header-includes:
- \usepackage{amsmath}
- \usepackage{amsthm}
- \usepackage{bbm}
- \numberwithin{equation}{section}
- \usepackage{makecell}
- \usepackage{indentfirst}
- \usepackage{geometry}
- \usepackage{graphicx}
- \usepackage{tikz}
- \AtEndPreamble{\usepackage{cleveref}}
---
```{r fig.align="center", fig.cap="\\label{fig:figure1} figure 1 "}
library(datasets)
library(tseries)
data("AirPassengers")
passengers <- AirPassengers
plot(passengers, main = "Monthly Air Passenger Traffic")
```
\begin{figure}
\tikzset{every picture/.style={line width=0.75pt}} %set default line width to 0.75pt
\begin{tikzpicture}[x=0.75pt,y=0.75pt,yscale=-1,xscale=1]
\draw [fill={rgb, 255:red, 0; green, 0; blue, 0 } ,fill opacity=0.32 ] (66.5,28.97) -- (248.5,28.97) -- (248.5,137) -- (66.5,137) -- cycle ;
\draw [fill={rgb, 255:red, 0; green, 0; blue, 0 } ,fill opacity=0.25 ] (62.5,265.61) -- (250.25,265.61) -- (250.25,356.79) -- (62.5,356.79) -- cycle ;
\end{tikzpicture}
\caption{\footnotesize Flow Diagram 1}
\label{fig:figure2}
\end{figure}
\begin{figure}
\tikzset{every picture/.style={line width=0.75pt}}
\begin{tikzpicture}[x=0.75pt,y=0.75pt,yscale=-1,xscale=1]
\draw [fill={rgb, 255:red, 0; green, 0; blue, 0 } ,fill opacity=0.32 ] (66.5,28.97) -- (248.5,28.97) -- (248.5,137) -- (66.5,137) -- cycle ;
\draw [fill={rgb, 255:red, 0; green, 0; blue, 0 } ,fill opacity=0.25 ] (62.5,265.61) -- (250.25,265.61) -- (250.25,356.79) -- (62.5,356.79) -- cycle ;
\end{tikzpicture}
\caption{\footnotesize Flow Diagram2}
\label{fig:figure3}
\end{figure}
```{r fig.align="center", fig.cap="\\label{fig:figure4}Trends", warning=FALSE, echo=FALSE, message=FALSE}
library(ggplot2)
qplot(Sepal.Length, data = iris, size = Petal.Width)
```
Look at \cref{fig:figure1}, \cref{fig:figure2}, \cref{fig:figure3} and \cref{fig:figure4}.