pythonvtkshapelypyvista

Separate vtk self intersected polydata into multiple polygons from duplicate points?


From a vtk self intersected polydata, I would like to separate it into multiple polygons.

Note that intersections in the initial polygon can be detected from duplicate points in the list of points that form the polygon.

Get the test file from a wget https://thredds-su.ipsl.fr/thredds/fileServer/ipsl_thredds/brocksce/tmp/poly_11.vtk

then

import pyvista as pv

a = pv.read('poly_11.vtk')

pl = pv.Plotter()
pl.add_mesh(a)
viewer = pl.show(jupyter_backend='trame', return_viewer=True)
display(viewer)

enter image description here

In fact I would like to describe its coordinates anti-clockwise as requested by the matplotlib path structure.

A solution could be to separate the polydata into 2 convex polygons then use the shapely orient function as needed (https://shapely.readthedocs.io/en/stable/manual.html?highlight=orient#shapely.geometry.polygon.orient).

So how to have 2 convex polygons from this set of lines (polydata) ?


Solution

  • Here is a solution.

    For each cell, find duplicate points, and extract polygons.

    enter image description here

    import numpy as np
    import vtk
    import pyvista as pv
    import random
    
    input_file_name = "poly_07.vtk"
    reader = vtk.vtkPolyDataReader()
    reader.SetFileName(input_file_name)
    reader.Update()
    
    p = reader.GetOutput()
    print("Number of cells: ", p.GetNumberOfCells())
    
    polys = []
    for cellIndex in range(p.GetNumberOfCells()):
    
        c = p.GetCell(cellIndex)
        print("-- Cell #%d Number of points: %d"  %(cellIndex, c.GetNumberOfPoints()))
        
        d = c.GetPointIds()
    
        ids = []
        for idIndex in range(d.GetNumberOfIds()):
            ids.append(d.GetId(idIndex))
        #print(ids)
    
        # Find duplicate points
        unique, count = np.unique(ids, return_counts=True)
        dup = unique[count > 1]
        print("---- Duplicate points: ", dup)
    
        # Extract points between duplicate points
        for id in dup[::-1]:
            select = np.where(ids == id)[0]
            polys.append(ids[select[0]:select[1]+1])
            idsIndices = list(range(select[0],select[1]))
            ids = list(np.delete(ids, idsIndices))
    
    print("Number of polygons: ", len(polys))
    
    # Display the results
    pl = pv.Plotter()
    for poly in polys:
        points = []
        for id in poly:
            points.append(p.GetPoint(id))
        m1 = pv.MultipleLines(points)
        random_color = "#"+''.join([random.choice('0123456789ABCDEF') for i in range(6)])
        pl.add_mesh(m1, color=random_color, line_width=2)
    viewer = pl.show(jupyter_backend='trame', return_viewer=True)
    display(viewer)
    

    with poly_07.vtk

    enter image description here