import skimage
import numpy as np
array = np.array(([1,1],[1,0]))
skimage.measure.regionprops_table(array, properties=("num_pixels", "area_filled"))
gives keyError for "num_pixels", even though it should be available as property. Is it a bug or am I doing something wrong? Thanks!
No it's not you, it's indeed a bug:
https://github.com/scikit-image/scikit-image/issues/7038
It was fixed here but the fix is not yet released.
Until it's released, if you are brave, you can modify your copy of the skimage/measure/_regionprops.py
file to match the fix.
Alternatively, as a workaround, you can use a custom property:
def num_pixels(binary_image):
return np.sum(binary_image.astype(int))
table = skimage.measure.regionprops_table(
array,
properties=("area_filled",),
extra_properties=(num_pixels,),
)