Two days ago, I started getting a weird error whenever I tried to knit a PDF document in Rmarkdown. I get this error now whenever I try to knit to PDF on this computer, using tinytex and knitr. The error is completely mysterious in that I can't find any other reference to it elsewhere on the web, I can't find any mention of the control sequence it complains about in the intermediate .knit.md or .tex files, and the content.
I'm posting this question because I have tried updating to the latest version of tinytex, so I'm now on version 4.7, and updating to the latest version of knitr, so I'm now on 1.44, and I'm on R 4.3.1 and I've restarted RStudio and R and I've restarted my entire computer, and none of that has helped.
So any suggestions for how I should proceed would be greatly appreciated.
The full knit message:
processing file: temp_rmarkdown_doc.Rmd
"C:/Program Files/RStudio/resources/app/bin/quarto/bin/tools/pandoc" +RTS -K512m -RTS temp_rmarkdown_doc.knit.md --to latex --from markdown+autolink_bare_uris+tex_math_single_backslash --output temp_rmarkdown_doc.tex --lua-filter "C:\Users\Louise.LOUISE-DESKTOP\AppData\Local\R\win-library\4.3\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\Louise.LOUISE-DESKTOP\AppData\Local\R\win-library\4.3\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --highlight-style tango --pdf-engine pdflatex --variable graphics --variable "geometry:margin=1in"
output file: temp_rmarkdown_doc.knit.md
This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdflatex)
restricted \write18 enabled.
entering extended mode
I was unable to find any missing LaTeX packages from the error log temp_rmarkdown_doc.log.
! Undefined control sequence.
l.128 \cs_new:Npe
\__color_backend_devicen_colorants:n #1
Error: LaTeX failed to compile temp_rmarkdown_doc.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See temp_rmarkdown_doc.log for more info.
Execution halted
This is the file I tried to knit:
---
title: "Untitled"
output: pdf_document
date: "2023-10-11"
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
options(tinytex.verbose = TRUE)
```
## R Markdown
This is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents.
(I previously tried with other files but this is a much simpler example that's causing the same error.)
The intermediate .tex file:
% Options for packages loaded elsewhere
\PassOptionsToPackage{unicode}{hyperref}
\PassOptionsToPackage{hyphens}{url}
%
\documentclass[
]{article}
\usepackage{amsmath,amssymb}
\usepackage{iftex}
\ifPDFTeX
\usepackage[T1]{fontenc}
\usepackage[utf8]{inputenc}
\usepackage{textcomp} % provide euro and other symbols
\else % if luatex or xetex
\usepackage{unicode-math} % this also loads fontspec
\defaultfontfeatures{Scale=MatchLowercase}
\defaultfontfeatures[\rmfamily]{Ligatures=TeX,Scale=1}
\fi
\usepackage{lmodern}
\ifPDFTeX\else
% xetex/luatex font selection
\fi
% Use upquote if available, for straight quotes in verbatim environments
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
\IfFileExists{microtype.sty}{% use microtype if available
\usepackage[]{microtype}
\UseMicrotypeSet[protrusion]{basicmath} % disable protrusion for tt fonts
}{}
\makeatletter
\@ifundefined{KOMAClassName}{% if non-KOMA class
\IfFileExists{parskip.sty}{%
\usepackage{parskip}
}{% else
\setlength{\parindent}{0pt}
\setlength{\parskip}{6pt plus 2pt minus 1pt}}
}{% if KOMA class
\KOMAoptions{parskip=half}}
\makeatother
\usepackage{xcolor}
\usepackage[margin=1in]{geometry}
\usepackage{graphicx}
\makeatletter
\def\maxwidth{\ifdim\Gin@nat@width>\linewidth\linewidth\else\Gin@nat@width\fi}
\def\maxheight{\ifdim\Gin@nat@height>\textheight\textheight\else\Gin@nat@height\fi}
\makeatother
% Scale images if necessary, so that they will not overflow the page
% margins by default, and it is still possible to overwrite the defaults
% using explicit options in \includegraphics[width, height, ...]{}
\setkeys{Gin}{width=\maxwidth,height=\maxheight,keepaspectratio}
% Set default figure placement to htbp
\makeatletter
\def\fps@figure{htbp}
\makeatother
\setlength{\emergencystretch}{3em} % prevent overfull lines
\providecommand{\tightlist}{%
\setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
\setcounter{secnumdepth}{-\maxdimen} % remove section numbering
\ifLuaTeX
\usepackage{selnolig} % disable illegal ligatures
\fi
\IfFileExists{bookmark.sty}{\usepackage{bookmark}}{\usepackage{hyperref}}
\IfFileExists{xurl.sty}{\usepackage{xurl}}{} % add URL line breaks if available
\urlstyle{same}
\hypersetup{
pdftitle={Untitled},
hidelinks,
pdfcreator={LaTeX via pandoc}}
\title{Untitled}
\author{}
\date{\vspace{-2.5em}2023-10-11}
\begin{document}
\maketitle
\hypertarget{r-markdown}{%
\subsection{R Markdown}\label{r-markdown}}
This is an R Markdown document. Markdown is a simple formatting syntax
for authoring HTML, PDF, and MS Word documents.
\end{document}
The full .log file:
This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdflatex 2023.9.22) 14 OCT 2023 12:33
entering extended mode
restricted \write18 enabled.
%&-line parsing enabled.
**temp_rmarkdown_doc.tex
(./temp_rmarkdown_doc.tex
LaTeX2e <2023-06-01> patch level 1
L3 programming layer <2023-08-29>
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File: size10.clo 2023/05/17 v1.4n Standard LaTeX file (size option)
)
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Package: amsmath 2023/05/13 v2.17o AMS math features
\@mathmargin=\skip50
For additional information on amsmath, use the `?' option.
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Package: amstext 2021/08/26 v2.01 AMS text
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LaTeX Font Info: Trying to load font information for T1+lmr on input line 72.
(c:/Users/Louise.LOUISE-DESKTOP/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/lm/t1lmr.fd
File: t1lmr.fd 2015/05/01 v1.6.1 Font defs for Latin Modern
) (c:/Users/Louise.LOUISE-DESKTOP/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def
File: l3backend-pdftex.def 2023-10-10 L3 backend support: PDF output (pdfTeX)
\l__color_backend_stack_int=\count286
! Undefined control sequence.
l.128 \cs_new:Npe
\__color_backend_devicen_colorants:n #1
Here is how much of TeX's memory you used:
10196 strings out of 476893
155195 string characters out of 5806206
1917785 words of memory out of 5000000
31398 multiletter control sequences out of 15000+600000
561822 words of font info for 38 fonts, out of 8000000 for 9000
14 hyphenation exceptions out of 8191
75i,0n,79p,323b,382s stack positions out of 10000i,1000n,20000p,200000b,200000s
! ==> Fatal error occurred, no output PDF file produced!
I had the same problem. tinytex::reinstall_tinytex() solved it.