pythonmatplotlib-animation

How to set xlim when save some frames to file by matplotlib in python?


I use python and matplotlib to create bar chart race animation, the data is time series and keep update every day. I want only save updated frames to file, for example, the frames are 10460 unti yesterday, the video file created in one hour. enter image description here

The new 10 frames are appended today, I used code to save the newest frames to file as below, but axis a is too short, how can I set axis x to the same as max x in past?

anim = FuncAnimation(self.fig, self.anim_func, frames[10460:], init_func, interval=interval)

enter image description here


Solution

  • A short summary of what follows and the answer addressing the expectations formulated in the question which can't be satisfied by means of matplotlib:

    Matplotlib itself does not automatically pre-compute or evaluate all frames of an animation to set axis limits or other properties ahead of time when you use its FuncAnimation() method.

    In FuncAnimation(), each frame's data is computed and rendered independently as part of the iterative update process. This is because of design for efficiency, particularly in scenarios where frames represent a continuous time series or simulation, and pre-computing every frame's data might be impractical due to memory constraints or computational cost.

    But you can overcome this limitation using the solutions provided in this answer below.

    Short overview of provided code addressing questions about the x_limit for the x-axis values of a plot:


    See demonstration how:

    # Set up the figure and axis
    fig, ax = plt.subplots()
    ax.set_xlim(0, 10)
    ax.set_ylim(-1.5, 1.5)
    

    impacts the outcome of animation:

    import matplotlib.pyplot as plt
    import numpy as np
    import matplotlib.animation as animation
    
    # Set up the figure and axis
    fig, ax = plt.subplots()
    ax.set_xlim(0, 10)
    ax.set_ylim(-1.5, 1.5)
    
    # Initialize the line plot
    line, = ax.plot([], [], lw=2)
    
    # Initial data
    x = np.linspace(0, 10, 1000)
    y = np.sin(x)
    
    def init():
        line.set_data([], [])
        return line,
    
    def update(frame):
        # Adjust the right endpoint to shorten the wave from the right
        x_new = np.linspace(0, 10 - frame / 10, 1000)
        y_new = np.sin(x_new * np.pi)  # Multiply by pi to maintain wave pattern despite shrinking domain
    
        line.set_data(x_new, y_new)
        return line,
    
    # Create animation
    ani = animation.FuncAnimation(fig, update, frames=np.linspace(0, 30, 100), init_func=init, blit=True)
    ani.event_source.stop() #stop the looping
    ani.save('fixXaxisRange.gif', writer='pillow', fps=10)
    
    plt.show()
    

    animation

    Another approach is to dynamically set the range of x axis depending on incoming data:

    import numpy as np
    import matplotlib.pyplot as plt
    import matplotlib.animation as animation
    
    def generate_sine_wave(frame, step=0.1):
        """ Generate x and y data for a sine wave up to the current frame. """
        # Ensure that frame is positive to avoid empty array
        if frame <= 0:
            return np.array([]), np.array([])
        x = np.linspace(0, 2 * np.pi * frame * step, int(frame * step * 100))
        y = np.sin(x)
        return x, y
    
    # Set up the figure, axis, and plot element
    fig, ax = plt.subplots()
    line, = ax.plot([], [], lw=2)
    ax.set_ylim(-1.5, 1.5)  # Set fixed y-axis limits for clarity
    
    # Initialize the animation by setting blank data
    def init():
        line.set_data([], [])
        ax.set_xlim(0, 10)  # Initial x-axis limit
        return line,
    
    # Update function for animation
    def update(frame):
        x, y = generate_sine_wave(frame)
        if x.size == 0:
            return line,  # If x is empty, just return the existing line object
    
        line.set_data(x, y)
        
        # Update the x-axis limits dynamically as the line grows
        if x[-1] > ax.get_xlim()[1]:  # Check if we need to expand the x-axis
            ax.set_xlim(ax.get_xlim()[0], x[-1] + 1)  # Add some padding to the right limit
            ax.figure.canvas.draw()  # Redraw the canvas to update the axis labels
        
        return line,
    
    # Number of frames depends on how long you want the animation to run
    frames = 60
    
    # Create the animation
    ani = animation.FuncAnimation(fig, update, frames=range(1, frames + 1), init_func=init, blit=False, repeat=False)
    
    ani.save('fixXaxisRange_2.gif', writer='pillow', fps=10)
    
    plt.show()
    
    

    animation_2

    If you want to save only the last 10 frames of the animation but run the entire range of data you can specify a start frame number for the animation ( the version storing all frames is outcommented):

    # Total frames in the full animation
    total_frames = 100
    # Calculate start frame for the last ten frames
    start_frame = total_frames - 10
    
    # Create the animation object, but only generate the last ten frames
    ani = animation.FuncAnimation(fig, update, frames=range(start_frame, total_frames), init_func=init, blit=False, repeat=False)
    #ani = animation.FuncAnimation(fig, update, frames=range(1,total_frames), init_func=init, blit=False, repeat=False)
    

    animation3b

    Below the case in which the range of the x-data is determined running the original animation function first letting it generate all the data for the animation first in order to define the actual animation function using the generated data. This way all of the data for the animation is known in advance what allows to set the x-axis limit for the entire animation:

    import numpy as np
    import matplotlib.pyplot as plt
    import matplotlib.animation as animation
    
    def generate_sine_wave(num_frames, step=0.1):
        data = []
        for frame in range(1, num_frames + 1):
            x = np.linspace(0, 2 * np.pi * frame * step, int(100 * step * frame))
            y = np.sin(x)
            data.append((x, y))
        return data
    
    # Number of frames
    total_frames = 100
    
    # Precompute all frame data
    frame_data = generate_sine_wave(total_frames)
    
    # Determine the maximum x-value across all frames
    max_x = max(np.max(x) for x, y in frame_data)
    
    # Set up the figure, axis, and plot element
    fig, ax = plt.subplots()
    line, = ax.plot([], [], lw=2)
    ax.set_ylim(-1.5, 1.5)  # Set fixed y-axis limits for clarity
    ax.set_xlim(0, max_x + 1)  # Set the x-axis to the maximum found
    
    # Initialize the animation by setting blank data
    def init():
        line.set_data([], [])
        return line,
    
    # Update function for animation
    def update(frame):
        x, y = frame_data[frame - 1]  # Use precomputed data
        line.set_data(x, y)
        return line,
    
    # Create the animation object using precomputed frame data
    numberOfFinalFramesToSave = 10
    ani = animation.FuncAnimation(fig, update, frames=range(total_frames-numberOfFinalFramesToSave, total_frames + 1), init_func=init, blit=False, repeat=False)
    
    # Save the animation as GIF
    ani.save('fixXaxisRange_4.gif', writer='pillow', fps=10)
    
    plt.show()
    

    animation4

    In case of your data take the animation updating function, rename it and let it generate the data for all frames. Then define the animation function as done in the code above delivering frame by frame the data generated in first step. The side-effect of this way of creating the animation is that the maximum x-value is known in advance and can be set for all the frames from within the script with no need to fix its value in code.