I have the following conda environment YAML file :
name: someapp
channels:
- conda-forge
- defaults
dependencies:
- flask=2.2.2
- pandas=1.5.3
- pip=23.0.1
- python=3.11.3
- pip:
- psycopg2-binary==2.9.9
- requests==2.32.3
prefix: /usr/local/anaconda3/envs/someapp
And I would like this env to be created when building my docker container (for a Flask app) but I have a ModuleNotFoundError: No module named 'requests' error when launching the server.py file where I import requests with the following DockerFile :
FROM continuumio/miniconda3
RUN apt-get update && \
apt-get install --yes --no-install-recommends \
&& apt-get clean
WORKDIR /app/services/back_end/
COPY ./environment.yml ./environment_server.yml
RUN conda env create -f ./environment_server.yml
# added line to try to install but doesn't work
RUN /bin/bash -c "source activate someapp && pip install requests"
RUN echo "source activate someapp" > ~/.bashrc
ENV PATH /opt/conda/envs/someapp/bin:$PATH
EXPOSE 6969
ENTRYPOINT ["python", "server.py"]
To run conda with your environment you should use conda command, but in your case you should change entrypoint for the container.
It should looks like
ENTRYPOINT ["conda", "run", "--no-capture-output", "-n", "someapp", "python", "server.py"]