I'm running GLMs in RStudio and am trying to get the output of my Tukey's post-hoc test directly into a PFD file, and not into the console.
pairs(emmeans(M50, ~AgeClass + Month, component="zi"),type="response", bias.adjust=F, adj="Tukey", infer=(TRUE))
When it appears in the console, I cannot read all the lines. I tried fixing that with this function rstudioapi::writeRStudioPreference("console_max_lines", 100000000) and changing the console properties etc., but none of that is working.
I've tried exporting it into a PDF using pdf("models.pdf") but I keep getting an empty file.
What should I do?
First, pdf() sets up a graphics output device. So if you do
pdf("plots.pdf")
plot(breaks ~ tension, data = warpbreaks)
dev.off()
the plot will be saved in the PDF file.
To divert, output, do a similar thing with the sink() function:
sink(file = "output.txt")
pairs(emmeans(...))
sink()
This will make a text file, obviously.
But I would encourage you to consider using R Markdown, by which you can put your code in a certain format (very similar to what you need to do to post on this forum), then format it, encapsulating buth the code and the output in one place. There are a number of R Markdown tutorials available -- just search for it.