I would like to install jupyter inside a conda environment and then install segment-geospatial, a python library from samgeo.
However installing segment-geospatial breaks something that causes jupyter notebooks to stop working. Jupyter lab works before I install the package. After I install it, I receive the following error when I try to start jupyter lab:
ModuleNotFoundError: No module named 'pysqlite2'
Any ideas on how to fix this?
Here's the steps I took:
conda create -c conda-forge -n MY_ENV_NAME python pandas jupyter ipykernel
conda activate MY_ENV_NAME
jupyter lab
# jupyter lab opens fine
conda install segment-geospatial
#install completes fine
jupyter lab
# jupyter lab does not open, I receive the error:
ModuleNotFoundError: No module named 'pysqlite2'
I'm using Ubuntu 22.04
Try installing segment-geospatial following documentation for samgeo on their Installation page, then installing jupyter inside your environment.
These steps worked for me to avoid breaking jupyter lab or jupyter notebooks.
conda create -n MY_ENV_NAME python
conda activate MY_ENV_NAME
conda install -c conda-forge mamba
mamba install -c conda-forge segment-geospatial
#install optional dependencies
mamba install -c conda-forge groundingdino-py segment-anything-fast
#install jupyter last
conda install jupyter
#open jupyter lab
jupyter lab
With this installation order, jupyter lab installs fine and I can use segment-geospatial inside my jupyter notebooks.