How do you convert an entire directory/folder with ffmpeg via command line or with a batch script?
Previous answer will only create 1 output file called out.mov. To make a separate output file for each old movie, try this.
for i in *.avi;
do name=`echo "$i" | cut -d'.' -f1`
echo "$name"
ffmpeg -i "$i" "${name}.mov"
done