Everything works fine locally when I do as follows:
cat input | python mapper.py | sort | python reducer.py
However, when I run the streaming MapReduce job on AWS Elastic Mapreduce, the job does not complete successfully. The mapper.py runs part way through (I know this because of writing to stderr along the way). The mapper is interrupted by a "Broken Pipe" error, which I'm able to retrieve from the syslog of the task attempt after it fails:
java.io.IOException: Broken pipe
at java.io.FileOutputStream.writeBytes(Native Method)
at java.io.FileOutputStream.write(FileOutputStream.java:282)
at java.io.BufferedOutputStream.write(BufferedOutputStream.java:105)
at java.io.BufferedOutputStream.flushBuffer(BufferedOutputStream.java:65)
at java.io.BufferedOutputStream.write(BufferedOutputStream.java:109)
at java.io.DataOutputStream.write(DataOutputStream.java:90)
at org.apache.hadoop.streaming.io.TextInputWriter.writeUTF8(TextInputWriter.java:72)
at org.apache.hadoop.streaming.io.TextInputWriter.writeValue(TextInputWriter.java:51)
at org.apache.hadoop.streaming.PipeMapper.map(PipeMapper.java:109)
at org.apache.hadoop.mapred.MapRunner.run(MapRunner.java:50)
at org.apache.hadoop.streaming.PipeMapRunner.run(PipeMapRunner.java:36)
at org.apache.hadoop.mapred.MapTask.runOldMapper(MapTask.java:441)
at org.apache.hadoop.mapred.MapTask.run(MapTask.java:377)
at org.apache.hadoop.mapred.Child$4.run(Child.java:255)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1059)
at org.apache.hadoop.mapred.Child.main(Child.java:249)
2012-03-26 07:19:05,400 WARN org.apache.hadoop.streaming.PipeMapRed (main): java.io.IOException: Broken pipe
at java.io.FileOutputStream.writeBytes(Native Method)
at java.io.FileOutputStream.write(FileOutputStream.java:282)
at java.io.BufferedOutputStream.write(BufferedOutputStream.java:105)
at java.io.BufferedOutputStream.flushBuffer(BufferedOutputStream.java:65)
at java.io.BufferedOutputStream.flush(BufferedOutputStream.java:123)
at java.io.DataOutputStream.flush(DataOutputStream.java:106)
at org.apache.hadoop.streaming.PipeMapRed.mapRedFinished(PipeMapRed.java:579)
at org.apache.hadoop.streaming.PipeMapper.map(PipeMapper.java:124)
at org.apache.hadoop.mapred.MapRunner.run(MapRunner.java:50)
at org.apache.hadoop.streaming.PipeMapRunner.run(PipeMapRunner.java:36)
at org.apache.hadoop.mapred.MapTask.runOldMapper(MapTask.java:441)
at org.apache.hadoop.mapred.MapTask.run(MapTask.java:377)
at org.apache.hadoop.mapred.Child$4.run(Child.java:255)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1059)
at org.apache.hadoop.mapred.Child.main(Child.java:249)
2012-03-26 07:19:05,400 INFO org.apache.hadoop.streaming.PipeMapRed (main): mapRedFinished
2012-03-26 07:19:05,400 WARN org.apache.hadoop.streaming.PipeMapRed (main): java.io.IOException: Bad file descriptor
at java.io.FileOutputStream.writeBytes(Native Method)
at java.io.FileOutputStream.write(FileOutputStream.java:282)
at java.io.BufferedOutputStream.write(BufferedOutputStream.java:105)
at java.io.BufferedOutputStream.flushBuffer(BufferedOutputStream.java:65)
at java.io.BufferedOutputStream.flush(BufferedOutputStream.java:123)
at java.io.DataOutputStream.flush(DataOutputStream.java:106)
at org.apache.hadoop.streaming.PipeMapRed.mapRedFinished(PipeMapRed.java:579)
at org.apache.hadoop.streaming.PipeMapper.close(PipeMapper.java:135)
at org.apache.hadoop.mapred.MapRunner.run(MapRunner.java:57)
at org.apache.hadoop.streaming.PipeMapRunner.run(PipeMapRunner.java:36)
at org.apache.hadoop.mapred.MapTask.runOldMapper(MapTask.java:441)
at org.apache.hadoop.mapred.MapTask.run(MapTask.java:377)
at org.apache.hadoop.mapred.Child$4.run(Child.java:255)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1059)
at org.apache.hadoop.mapred.Child.main(Child.java:249)
2012-03-26 07:19:05,400 INFO org.apache.hadoop.streaming.PipeMapRed (main): mapRedFinished
2012-03-26 07:19:05,405 INFO org.apache.hadoop.streaming.PipeMapRed (Thread-13): MRErrorThread done
2012-03-26 07:19:05,408 INFO org.apache.hadoop.mapred.TaskLogsTruncater (main): Initializing logs' truncater with mapRetainSize=-1 and reduceRetainSize=-1
2012-03-26 07:19:05,519 INFO org.apache.hadoop.io.nativeio.NativeIO (main): Initialized cache for UID to User mapping with a cache timeout of 14400 seconds.
2012-03-26 07:19:05,520 INFO org.apache.hadoop.io.nativeio.NativeIO (main): Got UserName hadoop for UID 106 from the native implementation
2012-03-26 07:19:05,522 WARN org.apache.hadoop.mapred.Child (main): Error running child
java.io.IOException: log:null
R/W/S=7018/3/0 in:NA [rec/s] out:NA [rec/s]
minRecWrittenToEnableSkip_=9223372036854775807 LOGNAME=null
HOST=null
USER=hadoop
HADOOP_USER=null
last Hadoop input: |null|
last tool output: |text/html 1|
Date: Mon Mar 26 07:19:05 UTC 2012
java.io.IOException: Broken pipe
at java.io.FileOutputStream.writeBytes(Native Method)
at java.io.FileOutputStream.write(FileOutputStream.java:282)
at java.io.BufferedOutputStream.write(BufferedOutputStream.java:105)
at java.io.BufferedOutputStream.flushBuffer(BufferedOutputStream.java:65)
at java.io.BufferedOutputStream.write(BufferedOutputStream.java:109)
at java.io.DataOutputStream.write(DataOutputStream.java:90)
at org.apache.hadoop.streaming.io.TextInputWriter.writeUTF8(TextInputWriter.java:72)
at org.apache.hadoop.streaming.io.TextInputWriter.writeValue(TextInputWriter.java:51)
at org.apache.hadoop.streaming.PipeMapper.map(PipeMapper.java:109)
at org.apache.hadoop.mapred.MapRunner.run(MapRunner.java:50)
at org.apache.hadoop.streaming.PipeMapRunner.run(PipeMapRunner.java:36)
at org.apache.hadoop.mapred.MapTask.runOldMapper(MapTask.java:441)
at org.apache.hadoop.mapred.MapTask.run(MapTask.java:377)
at org.apache.hadoop.mapred.Child$4.run(Child.java:255)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1059)
at org.apache.hadoop.mapred.Child.main(Child.java:249)
at org.apache.hadoop.streaming.PipeMapper.map(PipeMapper.java:125)
at org.apache.hadoop.mapred.MapRunner.run(MapRunner.java:50)
at org.apache.hadoop.streaming.PipeMapRunner.run(PipeMapRunner.java:36)
at org.apache.hadoop.mapred.MapTask.runOldMapper(MapTask.java:441)
at org.apache.hadoop.mapred.MapTask.run(MapTask.java:377)
at org.apache.hadoop.mapred.Child$4.run(Child.java:255)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1059)
at org.apache.hadoop.mapred.Child.main(Child.java:249)
2012-03-26 07:19:05,525 INFO org.apache.hadoop.mapred.Task (main): Runnning cleanup for the task
2012-03-26 07:19:05,526 INFO org.apache.hadoop.mapred.DirectFileOutputCommitter (main): Nothing to clean up on abort since there are no temporary files written
Here is mapper.py. Note that I write to stderr to provide myself with debugging info:
#!/usr/bin/env python
import sys
from warc import ARCFile
def main():
warc_file = ARCFile(fileobj=sys.stdin)
for web_page in warc_file:
print >> sys.stderr, '%s\t%s' % (web_page.header.content_type, 1) #For debugging
print '%s\t%s' % (web_page.header.content_type, 1)
print >> sys.stderr, 'done' #For debugging
if __name__ == "__main__":
main()
Here is what I get in the stderr for the task attempt when the mapper.py is run:
text/html 1
text/html 1
text/html 1
Basically, the loop runs through 3 times and then stops abruptly without python throwing any error. (Note: it should be outputting thousands of lines). Even an uncaught exception should appear in stderr.
Because the MapReduce runs completely fine on my local computer, my guess is that this is a problem with how Hadoop is dealing with the output I'm printing from mapper.py. But I'm clueless as to what the problem could be.
Your streaming process (your Python script) is terminating prematurely. This may be do to it thinking input is complete (e.g. interpreting an EOF) or a swallowed exception. Either way, Hadoop is trying to feed into via STDIN to your script, but since the application has terminated (and thus STDIN is no longer a valid File Descriptor), you're getting a BrokenPipe error. I would suggest adding stderr traces in your script to see what line of input is causing the problem. Happy coding,
-Geoff